{tools}[foss/2023b] petsc4py v3.22.5 by gkaf89 · Pull Request #23581 · easybuilders/easybuild-easyconfigs

gkaf89 · 2025-08-06T12:17:13Z

Add a Python bindings for PETSc of 2023b toolchain.

The version of petsc4py and PETSc must be the same. There was no release 3.22.5 for petsc4py in PyPI, but foss/2023b is using PETSc version 3.22.5. This commit originally built petsc4py from the bindings directory of the 3.22.5 release of PETSc.

Now the source code for the petsc4py v3.22.5 has been released in PyPI, and the package is being built from the PyPI source code.

github-actions · 2025-08-06T12:17:40Z

Updated software `petsc4py-3.22.5-foss-2023b.eb`

Diff against petsc4py-3.20.3-foss-2023a.eb

easybuild/easyconfigs/p/petsc4py/petsc4py-3.20.3-foss-2023a.eb

diff --git a/easybuild/easyconfigs/p/petsc4py/petsc4py-3.20.3-foss-2023a.eb b/easybuild/easyconfigs/p/petsc4py/petsc4py-3.22.5-foss-2023b.eb
index 595073d011..2d4544ae03 100644
--- a/easybuild/easyconfigs/p/petsc4py/petsc4py-3.20.3-foss-2023a.eb
+++ b/easybuild/easyconfigs/p/petsc4py/petsc4py-3.22.5-foss-2023b.eb
@@ -1,23 +1,22 @@
 easyblock = 'PythonPackage'
 
 name = 'petsc4py'
-version = '3.20.3'
+version = '3.22.5'
 
 homepage = 'https://gitlab.com/petsc/petsc'
-description = """petsc4py are Python bindings for PETSc, the Portable,
-Extensible Toolchain for Scientific Computation."""
+description = "petsc4py are Python bindings for PETSc, the Portable, Extensible Toolchain for Scientific Computation."
 
-toolchain = {'name': 'foss', 'version': '2023a'}
+toolchain = {'name': 'foss', 'version': '2023b'}
 
 sources = [SOURCE_TAR_GZ]
-checksums = ['8e10884df5ca38191b71294dc7e89f7479b18cca83fedfe27f89105e57c40785']
+checksums = ['058478cdba163e162d17ad14a8f71d519049a7c84807cd33a14c7f852988ec2e']
 
 dependencies = [
-    ('Python', '3.11.3'),
-    ('SciPy-bundle', '2023.07'),
+    ('Python', '3.11.5'),
+    ('SciPy-bundle', '2023.11'),
     ('PETSc', version),
 ]
 
-sanity_check_commands = ["python -c 'from petsc4py import PETSc'"]
+sanity_check_commands = ["mpirun -N 1 python -c 'from petsc4py import PETSc'"]
 
 moduleclass = 'tools'

Diff against petsc4py-3.17.4-foss-2022a.eb

easybuild/easyconfigs/p/petsc4py/petsc4py-3.17.4-foss-2022a.eb

diff --git a/easybuild/easyconfigs/p/petsc4py/petsc4py-3.17.4-foss-2022a.eb b/easybuild/easyconfigs/p/petsc4py/petsc4py-3.22.5-foss-2023b.eb
index fc5541e014..2d4544ae03 100644
--- a/easybuild/easyconfigs/p/petsc4py/petsc4py-3.17.4-foss-2022a.eb
+++ b/easybuild/easyconfigs/p/petsc4py/petsc4py-3.22.5-foss-2023b.eb
@@ -1,22 +1,22 @@
 easyblock = 'PythonPackage'
 
 name = 'petsc4py'
-version = '3.17.4'
+version = '3.22.5'
 
-homepage = 'https://bitbucket.org/petsc/petsc4py'
+homepage = 'https://gitlab.com/petsc/petsc'
 description = "petsc4py are Python bindings for PETSc, the Portable, Extensible Toolchain for Scientific Computation."
 
-toolchain = {'name': 'foss', 'version': '2022a'}
+toolchain = {'name': 'foss', 'version': '2023b'}
 
 sources = [SOURCE_TAR_GZ]
-checksums = ['216c3da074557946615d37d0826bc89f1f2e599323e2dacbdc45326d78bd50c6']
+checksums = ['058478cdba163e162d17ad14a8f71d519049a7c84807cd33a14c7f852988ec2e']
 
 dependencies = [
-    ('Python', '3.10.4'),
-    ('SciPy-bundle', '2022.05'),
+    ('Python', '3.11.5'),
+    ('SciPy-bundle', '2023.11'),
     ('PETSc', version),
 ]
 
-sanity_check_commands = ["python -c 'from petsc4py import PETSc'"]
+sanity_check_commands = ["mpirun -N 1 python -c 'from petsc4py import PETSc'"]
 
 moduleclass = 'tools'

Diff against petsc4py-3.15.0-foss-2021a.eb

easybuild/easyconfigs/p/petsc4py/petsc4py-3.15.0-foss-2021a.eb

diff --git a/easybuild/easyconfigs/p/petsc4py/petsc4py-3.15.0-foss-2021a.eb b/easybuild/easyconfigs/p/petsc4py/petsc4py-3.22.5-foss-2023b.eb
index 6741a386e9..2d4544ae03 100644
--- a/easybuild/easyconfigs/p/petsc4py/petsc4py-3.15.0-foss-2021a.eb
+++ b/easybuild/easyconfigs/p/petsc4py/petsc4py-3.22.5-foss-2023b.eb
@@ -1,22 +1,22 @@
 easyblock = 'PythonPackage'
 
 name = 'petsc4py'
-version = '3.15.0'
+version = '3.22.5'
 
-homepage = 'https://bitbucket.org/petsc/petsc4py'
+homepage = 'https://gitlab.com/petsc/petsc'
 description = "petsc4py are Python bindings for PETSc, the Portable, Extensible Toolchain for Scientific Computation."
 
-toolchain = {'name': 'foss', 'version': '2021a'}
+toolchain = {'name': 'foss', 'version': '2023b'}
 
 sources = [SOURCE_TAR_GZ]
-checksums = ['fe744bd9c92557f0a38027f19a419b6e6765a982f531d02e620c79eb1a97bae7']
+checksums = ['058478cdba163e162d17ad14a8f71d519049a7c84807cd33a14c7f852988ec2e']
 
 dependencies = [
-    ('Python', '3.9.5'),
-    ('SciPy-bundle', '2021.05'),
-    ('PETSc', '3.15.1'),
+    ('Python', '3.11.5'),
+    ('SciPy-bundle', '2023.11'),
+    ('PETSc', version),
 ]
 
-sanity_check_commands = ["python -c 'from petsc4py import PETSc'"]
+sanity_check_commands = ["mpirun -N 1 python -c 'from petsc4py import PETSc'"]
 
 moduleclass = 'tools'

easybuild/easyconfigs/p/petsc4py/petsc4py-3.22.5-foss-2023b.eb

Co-authored-by: Alexander Grund <Flamefire@users.noreply.github.com>

Flamefire

PYPI is the default URL for PythonPackages

easybuild/easyconfigs/p/petsc4py/petsc4py-3.22.5-foss-2023b.eb

Co-authored-by: Alexander Grund <Flamefire@users.noreply.github.com>

To ensure that we are linking with the correct easyconfig, build with: ``` eb --dry-run --robot=easyconfigs --from-pr=23581 easyconfigs/fenics-dolfinx-py-0.9.0-foss-2023b.eb ``` This command fetches the petsc4py of commit: easybuilders/easybuild-easyconfigs#23581

Requires: - [ ] easybuilders#23581

gkaf89 · 2025-09-07T20:28:28Z

Test report by @gkaf89
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
aion-0257 - Linux RHEL 8.10 (Ootpa), x86_64, AMD EPYC 7H12 64-Core Processor, Python 3.11.13
See https://gist.github.com/gkaf89/a2fb39f61dd21dc305d1eddde61e4f04 for a full test report.

gkaf89 · 2025-09-07T20:38:11Z

Test report by @gkaf89
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
aion-0257 - Linux RHEL 8.10 (Ootpa), x86_64, AMD EPYC 7H12 64-Core Processor, Python 3.11.13
See https://gist.github.com/gkaf89/2310f6fc146414a2c45ce7515ad63c18 for a full test report.

gkaf89 · 2025-09-10T12:56:49Z

Test report by @gkaf89
SUCCESS
Build succeeded for 14 out of 14 (7 easyconfigs in total)
aion-0331 - Linux RHEL 8.10 (Ootpa), x86_64, AMD EPYC 7H12 64-Core Processor, Python 3.11.13
See https://gist.github.com/gkaf89/33efbca5e7cfb3cd180049cbd43ddede for a full test report.

Thyre · 2025-09-10T14:27:28Z

@boegelbot please test @ jsc-zen3

boegelbot · 2025-09-10T14:30:10Z

@Thyre: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=23581 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_23581 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 7924

Test results coming soon (I hope)...

Details

- notification for comment with ID 3275237047 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2025-09-10T14:33:20Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.6, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/5583479e74cd76e4d6dedd291cae1e5a for a full test report.

Crivella · 2025-10-17T09:57:09Z

Test report by @Crivella
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
crivella-desktop - Linux Ubuntu 22.04.5 LTS (Jammy Jellyfish), x86_64, 13th Gen Intel(R) Core(TM) i9-13900K (skylake), Python 3.11.13
See https://gist.github.com/Crivella/d0da4a61c3dd83e91e2c11031bd2dd82 for a full test report.

Crivella

LGTM

Crivella

LGTM

Crivella · 2025-10-17T10:02:39Z

Going in, thanks @gkaf89!

adding easyconfigs: petsc4py-3.22.5-foss-2023b.eb

103ded1

github-actions bot added the update label Aug 6, 2025

gkaf89 mentioned this pull request Aug 6, 2025

{tools}[foss/2023b] petsc4py v3.20.3 #20569

Closed

1 task

gkaf89 added 2 commits August 6, 2025 14:35

[STYLE] Avoid declaring default options

78c8735

[STYLE] Comment on the need to build from PETSc source

e993d4f

Flamefire reviewed Aug 6, 2025

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gkaf89 and others added 3 commits August 6, 2025 18:17

Fix comment typo

c98cb3d

Co-authored-by: Alexander Grund <Flamefire@users.noreply.github.com>

[STYLE] Use more succinct source definitions

252b303

Co-authored-by: Alexander Grund <Flamefire@users.noreply.github.com>

[REFACTOR] Install from sources that were made available in PyPI

5d84536

gkaf89 requested a review from Flamefire August 6, 2025 18:56

Flamefire suggested changes Aug 7, 2025

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Thyre added the 2023b label Aug 7, 2025

[STYLE] Use default source for pip and EB source template constant

7a3886d

Co-authored-by: Alexander Grund <Flamefire@users.noreply.github.com>

Flamefire approved these changes Aug 7, 2025

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gkaf89 requested a review from Flamefire August 8, 2025 09:18

Flamefire approved these changes Aug 8, 2025

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gkaf89 mentioned this pull request Sep 5, 2025

Build FEniCS in foss 2023b #23803

Closed

gkaf89 added a commit to gkaf89/easybuild-easyconfigs that referenced this pull request Sep 5, 2025

{tools}[foss/2023b] slepc4py v3.22.2

870b5e8

Requires: - [ ] easybuilders#23581

gkaf89 mentioned this pull request Sep 5, 2025

{tools}[foss/2023b] slepc4py v3.22.2 #23805

Merged

gkaf89 mentioned this pull request Sep 10, 2025

{tools}[foss/2023b] FEniCS v0.9.0 #23838

Merged

ocaisa self-assigned this Oct 13, 2025

Crivella added this to the next release (5.2.0?) milestone Oct 17, 2025

Crivella reviewed Oct 17, 2025

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Crivella approved these changes Oct 17, 2025

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Crivella merged commit 07d9aa2 into easybuilders:develop Oct 17, 2025
8 checks passed

gkaf89 deleted the 20250806141710_new_pr_petsc4py3225 branch November 17, 2025 14:41

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Updated software `petsc4py-3.22.5-foss-2023b.eb`