{lib}[foss/2024a] python-igraph v0.11.9, igraph v0.10.16 by PetrKralCZ · Pull Request #23313 · easybuilders/easybuild-easyconfigs

PetrKralCZ · 2025-07-04T08:42:16Z

(created using eb --new-pr)

…5-foss-2024a.eb

github-actions · 2025-07-04T08:42:43Z

Updated software `igraph-0.10.16-foss-2024a.eb`

Diff against igraph-0.10.12-foss-2023b.eb

easybuild/easyconfigs/i/igraph/igraph-0.10.12-foss-2023b.eb

diff --git a/easybuild/easyconfigs/i/igraph/igraph-0.10.12-foss-2023b.eb b/easybuild/easyconfigs/i/igraph/igraph-0.10.16-foss-2024a.eb
index 6e5f77cd3c..abe6b02ba9 100644
--- a/easybuild/easyconfigs/i/igraph/igraph-0.10.12-foss-2023b.eb
+++ b/easybuild/easyconfigs/i/igraph/igraph-0.10.16-foss-2024a.eb
@@ -6,29 +6,29 @@
 easyblock = 'CMakeMake'
 
 name = 'igraph'
-version = '0.10.12'
+version = '0.10.16'
 
 homepage = 'https://igraph.org'
 description = """igraph is a collection of network analysis tools with the emphasis on
 efficiency, portability and ease of use. igraph is open source and free. igraph can be
 programmed in R, Python and C/C++."""
 
-toolchain = {'name': 'foss', 'version': '2023b'}
+toolchain = {'name': 'foss', 'version': '2024a'}
 toolchainopts = {'pic': True}
 
 source_urls = ['https://github.com/igraph/igraph/releases/download/%(version)s']
 sources = [SOURCE_TAR_GZ]
-checksums = ['b011f7f9f38a3e59924cc9ff652e6d33105fa03fcaf3792f47d752626a0a4625']
+checksums = ['15a1540a8d270232c9aa99adeeffb7787bea96289d6bef6646ec9c91a9a93992']
 
 builddependencies = [
-    ('CMake', '3.27.6'),
+    ('CMake', '3.29.3'),
 ]
 
 dependencies = [
     ('GLPK', '5.0'),
-    ('libxml2', '2.11.5'),
-    ('zlib', '1.2.13'),
-    ('arpack-ng', '3.9.0'),
+    ('libxml2', '2.12.7'),
+    ('zlib', '1.3.1'),
+    ('arpack-ng', '3.9.1'),
 ]
 
 # Build static and shared libraries

Diff against igraph-0.10.10-foss-2023a.eb

easybuild/easyconfigs/i/igraph/igraph-0.10.10-foss-2023a.eb

diff --git a/easybuild/easyconfigs/i/igraph/igraph-0.10.10-foss-2023a.eb b/easybuild/easyconfigs/i/igraph/igraph-0.10.16-foss-2024a.eb
index 6ed3462390..abe6b02ba9 100644
--- a/easybuild/easyconfigs/i/igraph/igraph-0.10.10-foss-2023a.eb
+++ b/easybuild/easyconfigs/i/igraph/igraph-0.10.16-foss-2024a.eb
@@ -1,33 +1,34 @@
 # Author: Denis Krišťák (INUITS)
 # Modified: Jasper Grimm (UoY)
 # Update: Pavel Tománek (INUITS)
+# Update: Petr Král (INUITS)
 
 easyblock = 'CMakeMake'
 
 name = 'igraph'
-version = '0.10.10'
+version = '0.10.16'
 
 homepage = 'https://igraph.org'
 description = """igraph is a collection of network analysis tools with the emphasis on
 efficiency, portability and ease of use. igraph is open source and free. igraph can be
 programmed in R, Python and C/C++."""
 
-toolchain = {'name': 'foss', 'version': '2023a'}
+toolchain = {'name': 'foss', 'version': '2024a'}
 toolchainopts = {'pic': True}
 
 source_urls = ['https://github.com/igraph/igraph/releases/download/%(version)s']
 sources = [SOURCE_TAR_GZ]
-checksums = ['6148f2e72a183ef5cd08324cccc73fa9eb8e54bb5a96c7f8f3c0465432ec2404']
+checksums = ['15a1540a8d270232c9aa99adeeffb7787bea96289d6bef6646ec9c91a9a93992']
 
 builddependencies = [
-    ('CMake', '3.26.3'),
+    ('CMake', '3.29.3'),
 ]
 
 dependencies = [
     ('GLPK', '5.0'),
-    ('libxml2', '2.11.4'),
-    ('zlib', '1.2.13'),
-    ('arpack-ng', '3.9.0'),
+    ('libxml2', '2.12.7'),
+    ('zlib', '1.3.1'),
+    ('arpack-ng', '3.9.1'),
 ]
 
 # Build static and shared libraries

Diff against igraph-0.10.6-foss-2022b.eb

easybuild/easyconfigs/i/igraph/igraph-0.10.6-foss-2022b.eb

diff --git a/easybuild/easyconfigs/i/igraph/igraph-0.10.6-foss-2022b.eb b/easybuild/easyconfigs/i/igraph/igraph-0.10.16-foss-2024a.eb
index 6945d8d2c8..abe6b02ba9 100644
--- a/easybuild/easyconfigs/i/igraph/igraph-0.10.6-foss-2022b.eb
+++ b/easybuild/easyconfigs/i/igraph/igraph-0.10.16-foss-2024a.eb
@@ -1,32 +1,34 @@
 # Author: Denis Krišťák (INUITS)
 # Modified: Jasper Grimm (UoY)
+# Update: Pavel Tománek (INUITS)
+# Update: Petr Král (INUITS)
 
 easyblock = 'CMakeMake'
 
 name = 'igraph'
-version = '0.10.6'
+version = '0.10.16'
 
 homepage = 'https://igraph.org'
 description = """igraph is a collection of network analysis tools with the emphasis on
 efficiency, portability and ease of use. igraph is open source and free. igraph can be
 programmed in R, Python and C/C++."""
 
-toolchain = {'name': 'foss', 'version': '2022b'}
+toolchain = {'name': 'foss', 'version': '2024a'}
 toolchainopts = {'pic': True}
 
 source_urls = ['https://github.com/igraph/igraph/releases/download/%(version)s']
 sources = [SOURCE_TAR_GZ]
-checksums = ['99bf91ee90febeeb9a201f3e0c1d323c09214f0b5f37a4290dc3b63f52839d6d']
+checksums = ['15a1540a8d270232c9aa99adeeffb7787bea96289d6bef6646ec9c91a9a93992']
 
 builddependencies = [
-    ('CMake', '3.24.3'),
+    ('CMake', '3.29.3'),
 ]
 
 dependencies = [
     ('GLPK', '5.0'),
-    ('libxml2', '2.10.3'),
-    ('zlib', '1.2.12'),
-    ('arpack-ng', '3.8.0'),
+    ('libxml2', '2.12.7'),
+    ('zlib', '1.3.1'),
+    ('arpack-ng', '3.9.1'),
 ]
 
 # Build static and shared libraries

Updated software `python-igraph-0.11.9-foss-2024a.eb`

Diff against python-igraph-0.11.8-foss-2023b.eb

easybuild/easyconfigs/p/python-igraph/python-igraph-0.11.8-foss-2023b.eb

diff --git a/easybuild/easyconfigs/p/python-igraph/python-igraph-0.11.8-foss-2023b.eb b/easybuild/easyconfigs/p/python-igraph/python-igraph-0.11.9-foss-2024a.eb
index 1bd68187f6..e663f1b08f 100644
--- a/easybuild/easyconfigs/p/python-igraph/python-igraph-0.11.8-foss-2023b.eb
+++ b/easybuild/easyconfigs/p/python-igraph/python-igraph-0.11.9-foss-2024a.eb
@@ -1,26 +1,26 @@
 easyblock = 'PythonBundle'
 
 name = 'python-igraph'
-version = '0.11.8'
+version = '0.11.9'
 
 homepage = 'https://igraph.org/python'
 description = """Python interface to the igraph high performance graph library, primarily aimed at complex network
  research and analysis."""
 
-toolchain = {'name': 'foss', 'version': '2023b'}
+toolchain = {'name': 'foss', 'version': '2024a'}
 
 builddependencies = [
-    ('pkgconf', '2.0.3'),
-    ('CMake', '3.27.6'),
+    ('pkgconf', '2.2.0'),
+    ('CMake', '3.29.3'),
 ]
 
 dependencies = [
-    ('Python', '3.11.5'),
-    ('Python-bundle-PyPI', '2023.10'),
-    ('Clang', '17.0.6'),
-    ('libxml2', '2.11.5'),
-    ('zlib', '1.2.13'),
-    ('igraph', '0.10.12'),
+    ('Python', '3.12.3'),
+    ('Python-bundle-PyPI', '2024.06'),
+    ('Clang', '18.1.8'),
+    ('libxml2', '2.12.7'),
+    ('zlib', '1.3.1'),
+    ('igraph', '0.10.16'),
     ('cairo', '1.18.0'),
 ]
 
@@ -33,7 +33,7 @@ exts_list = [
     }),
     ('igraph', version, {
         'modulename': 'igraph',
-        'checksums': ['d7dc1404567ba3b0ea1bf8b5fa6e101617915c8ad11ea5a9f925a40bf4adad7d'],
+        'checksums': ['c57ce44873abcfcfd1d61d7d261e416d352186958e7b5d299cf244efa6757816'],
     }),
 ]

Diff against python-igraph-0.11.4-foss-2023a.eb

easybuild/easyconfigs/p/python-igraph/python-igraph-0.11.4-foss-2023a.eb

diff --git a/easybuild/easyconfigs/p/python-igraph/python-igraph-0.11.4-foss-2023a.eb b/easybuild/easyconfigs/p/python-igraph/python-igraph-0.11.9-foss-2024a.eb
index 22fbd94f2b..e663f1b08f 100644
--- a/easybuild/easyconfigs/p/python-igraph/python-igraph-0.11.4-foss-2023a.eb
+++ b/easybuild/easyconfigs/p/python-igraph/python-igraph-0.11.9-foss-2024a.eb
@@ -1,43 +1,42 @@
 easyblock = 'PythonBundle'
 
 name = 'python-igraph'
-version = '0.11.4'
+version = '0.11.9'
 
 homepage = 'https://igraph.org/python'
 description = """Python interface to the igraph high performance graph library, primarily aimed at complex network
  research and analysis."""
 
-toolchain = {'name': 'foss', 'version': '2023a'}
+toolchain = {'name': 'foss', 'version': '2024a'}
 
 builddependencies = [
-    ('pkgconf', '1.9.5'),
-    ('CMake', '3.26.3'),
+    ('pkgconf', '2.2.0'),
+    ('CMake', '3.29.3'),
 ]
 
 dependencies = [
-    ('Python', '3.11.3'),
-    ('Python-bundle-PyPI', '2023.06'),
-    ('Clang', '16.0.6'),
-    ('libxml2', '2.11.4'),
-    ('zlib', '1.2.13'),
-    ('igraph', '0.10.10'),
-    ('cairo', '1.17.8'),
+    ('Python', '3.12.3'),
+    ('Python-bundle-PyPI', '2024.06'),
+    ('Clang', '18.1.8'),
+    ('libxml2', '2.12.7'),
+    ('zlib', '1.3.1'),
+    ('igraph', '0.10.16'),
+    ('cairo', '1.18.0'),
 ]
 
 exts_list = [
     ('texttable', '1.7.0', {
         'checksums': ['2d2068fb55115807d3ac77a4ca68fa48803e84ebb0ee2340f858107a36522638'],
     }),
-    ('cairocffi', '1.6.1', {
-        'checksums': ['78e6bbe47357640c453d0be929fa49cd05cce2e1286f3d2a1ca9cbda7efdb8b7'],
+    ('cairocffi', '1.7.1', {
+        'checksums': ['2e48ee864884ec4a3a34bfa8c9ab9999f688286eb714a15a43ec9d068c36557b'],
     }),
     ('igraph', version, {
         'modulename': 'igraph',
-        'checksums': ['2437ae0157af6824e2e65a23f7a1fa4fbf0f3664333c72aeca4fc01b83e18483'],
+        'checksums': ['c57ce44873abcfcfd1d61d7d261e416d352186958e7b5d299cf244efa6757816'],
     }),
 ]
 
-
 # cairo must be available for proper plotting support
 sanity_check_commands = [
     "python -c 'from igraph.drawing.cairo.utils import find_cairo; "

Diff against python-igraph-0.10.6-foss-2022b.eb

easybuild/easyconfigs/p/python-igraph/python-igraph-0.10.6-foss-2022b.eb

diff --git a/easybuild/easyconfigs/p/python-igraph/python-igraph-0.10.6-foss-2022b.eb b/easybuild/easyconfigs/p/python-igraph/python-igraph-0.11.9-foss-2024a.eb
index 32ef313caf..e663f1b08f 100644
--- a/easybuild/easyconfigs/p/python-igraph/python-igraph-0.10.6-foss-2022b.eb
+++ b/easybuild/easyconfigs/p/python-igraph/python-igraph-0.11.9-foss-2024a.eb
@@ -1,49 +1,42 @@
 easyblock = 'PythonBundle'
 
 name = 'python-igraph'
-version = '0.10.6'
+version = '0.11.9'
 
 homepage = 'https://igraph.org/python'
 description = """Python interface to the igraph high performance graph library, primarily aimed at complex network
  research and analysis."""
 
-toolchain = {'name': 'foss', 'version': '2022b'}
+toolchain = {'name': 'foss', 'version': '2024a'}
 
 builddependencies = [
-    ('pkgconf', '1.9.3'),
-    ('CMake', '3.24.3'),
+    ('pkgconf', '2.2.0'),
+    ('CMake', '3.29.3'),
 ]
 
 dependencies = [
-    ('Python', '3.10.8'),
-    ('igraph', '0.10.6'),
-    ('Clang', '16.0.4'),
-    ('libxml2', '2.10.3'),
-    ('zlib', '1.2.12'),
-    ('cairo', '1.17.4'),
+    ('Python', '3.12.3'),
+    ('Python-bundle-PyPI', '2024.06'),
+    ('Clang', '18.1.8'),
+    ('libxml2', '2.12.7'),
+    ('zlib', '1.3.1'),
+    ('igraph', '0.10.16'),
+    ('cairo', '1.18.0'),
 ]
 
 exts_list = [
-    ('texttable', '1.6.4', {
-        'checksums': ['42ee7b9e15f7b225747c3fa08f43c5d6c83bc899f80ff9bae9319334824076e9'],
+    ('texttable', '1.7.0', {
+        'checksums': ['2d2068fb55115807d3ac77a4ca68fa48803e84ebb0ee2340f858107a36522638'],
     }),
-    ('cairocffi', '1.6.1', {
-        'checksums': ['78e6bbe47357640c453d0be929fa49cd05cce2e1286f3d2a1ca9cbda7efdb8b7'],
+    ('cairocffi', '1.7.1', {
+        'checksums': ['2e48ee864884ec4a3a34bfa8c9ab9999f688286eb714a15a43ec9d068c36557b'],
     }),
-    # The pypi project 'python-igraph' is depreicated, use pypi package igraph instead. To avoid
-    # collision with the C/C++ build of igraph, continue to use the package name 'python-igraph'
     ('igraph', version, {
-        'installopts': '--install-option="--use-pkg-config"',
         'modulename': 'igraph',
-        'checksums': ['76f7aad294514412f835366a7d9a9c1e7a34c3e6ef0a6c3a1a835234323228e8'],
+        'checksums': ['c57ce44873abcfcfd1d61d7d261e416d352186958e7b5d299cf244efa6757816'],
     }),
 ]
 
-sanity_check_paths = {
-    'files': ['bin/igraph'],
-    'dirs': ['lib/python%(pyshortver)s/site-packages'],
-}
-
 # cairo must be available for proper plotting support
 sanity_check_commands = [
     "python -c 'from igraph.drawing.cairo.utils import find_cairo; "

PetrKralCZ · 2025-07-04T08:54:06Z

@boegelbot please test @ jsc-zen3

boegelbot · 2025-07-04T09:00:08Z

@PetrKralCZ: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=23313 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_23313 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 7136

Test results coming soon (I hope)...

Details

- notification for comment with ID 3035046887 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2025-07-04T14:20:00Z

Test report by @boegelbot
SUCCESS
Build succeeded for 3 out of 3 (2 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/dba817427f85dbf5473ec81344b2f6b5 for a full test report.

easybuild/easyconfigs/p/python-igraph/python-igraph-0.11.8-foss-2024a.eb

PetrKralCZ · 2025-07-14T08:47:37Z

@boegelbot please test @ jsc-zen3

PetrKralCZ · 2025-07-16T13:05:04Z

Test report by @PetrKralCZ
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
node4006.donphan.os - Linux RHEL 9.4, x86_64, Intel(R) Xeon(R) Gold 6240 CPU @ 2.60GHz, 1 x NVIDIA NVIDIA A2, 570.133.20, Python 3.9.18
See https://gist.github.com/PetrKralCZ/12674bf96530f4c979c9986f7c8129d2 for a full test report.

boegelbot · 2025-07-16T13:10:09Z

@PetrKralCZ: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=23313 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_23313 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 7272

Test results coming soon (I hope)...

Details

- notification for comment with ID 3068467745 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2025-07-16T13:21:27Z

Test report by @boegelbot
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/ac4a4633b91f509902854c077eb22670 for a full test report.

laraPPr

lgtm

laraPPr · 2025-07-18T11:49:11Z

Test report by @laraPPr
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
node3537.doduo.os - Linux RHEL 9.4 (Plow), x86_64, AMD EPYC 7552 48-Core Processor, Python 3.9.18
See https://gist.github.com/laraPPr/ec26420f2f21fe9af01a31ae6b83d701 for a full test report.

laraPPr · 2025-07-18T11:50:07Z

Going in, thanks @PetrKralCZ!

adding easyconfigs: python-igraph-0.11.8-foss-2024a.eb, igraph-0.10.1…

7358327

…5-foss-2024a.eb

PetrKralCZ added the update label Jul 4, 2025

This was referenced Jul 4, 2025

SnapATAC2 vscentrum/vsc-software-stack#547

Closed

{bio,lib,math,tools}[foss/2024a] SnapATAC2 v2.9.0-dev0-20250630, anndata v0.10.9, rustworkx v0.16.0, ... #23314

Merged

Micket reviewed Jul 12, 2025

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update versions

8a63ac3

PetrKralCZ changed the title ~~{lib}[foss/2024a] python-igraph v0.11.8, igraph v0.10.15~~ {lib}[foss/2024a] python-igraph v0.11.9, igraph v0.10.16 Jul 14, 2025

laraPPr approved these changes Jul 18, 2025

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laraPPr added this to the 5.x milestone Jul 18, 2025

laraPPr merged commit 2cd926d into easybuilders:develop Jul 18, 2025
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laraPPr modified the milestones: 5.x, release after 5.1.1 Jul 18, 2025

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{lib}[foss/2024a] python-igraph v0.11.9, igraph v0.10.16#23313

{lib}[foss/2024a] python-igraph v0.11.9, igraph v0.10.16#23313
laraPPr merged 2 commits intoeasybuilders:developfrom
PetrKralCZ:20250704104213_new_pr_python-igraph0118

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Updated software igraph-0.10.16-foss-2024a.eb

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Updated software `igraph-0.10.16-foss-2024a.eb`

Updated software `python-igraph-0.11.9-foss-2024a.eb`