Add patch to fix permission denied issue during PyTables installation.

[dagonzalezfo]

During the PyTable package installation, you will get:

PermissionError: [Errno 13] Permission denied: '<buildpath>/tables/libblosc2.so'

This is trigger by using shutil.copy, that create a copy of from $EBROOTLIBLOSC2/lib/libblosc2.so on <buildpath>/tables/libblosc2.so. However, shutil.copy enforces to have the same permissions as the origin, causing the issue.

This can be solved by changing shutil.copy by shutil.copyfile.

[Crivella]

Tried to install the same package without this patch, but it still works, which is weird considering the behavior of shutil.copy and shutil.copyfile should be the same (I mean across our 2 different tests) as they came from the EB-intalled python.

Are you doing your test on some more problematic filesystem (eg NFS or Lustre)?

[dagonzalezfo]

This issue is related with installing this package using the EESSI machinery. I manage to reproduce this issue on using a local storage. Without this patch, I get the reported error. In any case, I will do some testing outside of EESSI and update this PR accordingly.

[casparvl]

Maybe I'm not fully understanding, but would this still be needed if we have #23042 ? I think that makes the current PR obsolete, no?

[dagonzalezfo]

As Caspar comment, this is covered by #23042