{bio}[foss/2023a] metaWRAP v1.4-20230728 w/ Python 2.7.18

easybuild/easyconfigs/m/metaWRAP/metaWRAP-1.4-20230728-foss-2023a-Python-2.7.18.eb

@@ -0,0 +1,60 @@
+easyblock = 'Tarball'
+
+name = 'metaWRAP'
+version = '1.4-20230728'
+local_commit = 'c4a23f0'
+versionsuffix = '-Python-%(pyver)s'
+
+homepage = 'https://github.com/bxlab/metaWRAP'
+description = """MetaWRAP aims to be an easy-to-use metagenomic wrapper suite
+that accomplishes the core tasks of metagenomic analysis from start to finish:
+read quality control, assembly, visualization, taxonomic profiling, extracting
+draft genomes (binning), and functional annotation."""
+
+toolchain = {'name': 'foss', 'version': '2023a'}
+
+source_urls = ['https://github.com/bxlab/metaWRAP/archive/']
+sources = [{'download_filename': '%s.tar.gz' % local_commit, 'filename': SOURCE_TAR_GZ}]
+checksums = ['f73cd1adb655e40b3bd40722414238bb2ea9dc62e6acef56abe3c8e44e8fe6f3']
+
+builddependencies = [
+    ('Java', '11', '', SYSTEM),
+]
+
+# see https://github.com/bxlab/metaWRAP/blob/master/installation/dependancies.md
+dependencies = [
+    ('Python', '2.7.18'),
+    ('Perl', '5.36.1'),
+    ('R', '4.3.2'),
+    ('BLAST+', '2.14.1'),
+    ('bmtagger', '3.101', '-Java-11'),
+    ('Bowtie2', '2.5.4', versionsuffix),
+    ('BWA', '0.7.17'),  # 0.7.18?
+    ('CheckM', '1.0.18', versionsuffix),
+    ('FastQC', '0.11.9', '-Java-11', SYSTEM),
+    ('Kraken2', '2.1.3'),  # previously Kraken
+    ('KronaTools', '2.8.1'),
+    ('MEGAHIT', '1.2.9', versionsuffix),
+    ('MetaBAT', '2.17'),
+    ('CONCOCT', '1.1.0', versionsuffix),
+    ('MaxBin', '2.2.7', versionsuffix),
+    ('QUAST', '5.2.0', versionsuffix),
+    ('SAMtools', '1.18'),  # 1.13?
+    ('SPAdes', '3.15.5', versionsuffix),
+    ('Trim_Galore', '0.6.10', versionsuffix),
+    ('Seaborn', '0.9.1', versionsuffix),
+    ('Salmon', '1.10.3'),
+    ('taxator-tk', '1.5.0', versionsuffix),
+    ('prokka', '1.14.5'),
+]
+
+postinstallcmds = ['cd %(installdir)s/bin && ln -r -s metawrap metaWRAP']
+
+sanity_check_paths = {
+    'files': ['bin/config-metawrap', 'bin/metaWRAP'],
+    'dirs': [],
+}
+
+sanity_check_commands = ["metaWRAP --help"]
+
+moduleclass = 'bio'