{bio}[foss/2023a] Biopython v1.76 w/ Python 2.7.18

[PetrKralCZ]

No description provided.

[github-actions]

Updated software Biopython-1.76-foss-2023a-Python-2.7.18.eb

Diff against Biopython-1.84-foss-2024a.eb

easybuild/easyconfigs/b/Biopython/Biopython-1.84-foss-2024a.eb

diff --git a/easybuild/easyconfigs/b/Biopython/Biopython-1.84-foss-2024a.eb b/easybuild/easyconfigs/b/Biopython/Biopython-1.76-foss-2023a-Python-2.7.18.eb
index 260b432d76..d063a9d25f 100644
--- a/easybuild/easyconfigs/b/Biopython/Biopython-1.84-foss-2024a.eb
+++ b/easybuild/easyconfigs/b/Biopython/Biopython-1.76-foss-2023a-Python-2.7.18.eb
@@ -1,11 +1,8 @@
-# Updated from previous easyconfig
-# Author: Robert Mijakovic <robert.mijakovic@lxp.lu>
-# Update: Pavel Tománek (INUITS)
-
 easyblock = 'PythonPackage'
 
 name = 'Biopython'
-version = '1.84'
+version = '1.76'
+versionsuffix = '-Python-%(pyver)s'
 
 homepage = 'https://www.biopython.org'
 description = """Biopython is a set of freely available tools for biological
@@ -14,15 +11,15 @@ description = """Biopython is a set of freely available tools for biological
  applications which address the needs of current and future work in
  bioinformatics. """
 
-toolchain = {'name': 'foss', 'version': '2024a'}
+toolchain = {'name': 'foss', 'version': '2023a'}
 
 source_urls = ['https://biopython.org/DIST']
 sources = [SOURCELOWER_TAR_GZ]
-checksums = ['60fbe6f996e8a6866a42698c17e552127d99a9aab3259d6249fbaabd0e0cc7b4']
+checksums = ['3873cb98dad5e28d5e3f2215a012565345a398d3d2c4eebf7cd701757b828c72']
 
 dependencies = [
-    ('Python', '3.12.3'),
-    ('SciPy-bundle', '2024.05'),
+    ('Python', '2.7.18'),
+    ('numpy', '1.16.6', versionsuffix),
 ]
 
 download_dep_fail = True

Diff against Biopython-1.84-foss-2023b.eb

easybuild/easyconfigs/b/Biopython/Biopython-1.84-foss-2023b.eb

diff --git a/easybuild/easyconfigs/b/Biopython/Biopython-1.84-foss-2023b.eb b/easybuild/easyconfigs/b/Biopython/Biopython-1.76-foss-2023a-Python-2.7.18.eb
index 03c23f4118..d063a9d25f 100644
--- a/easybuild/easyconfigs/b/Biopython/Biopython-1.84-foss-2023b.eb
+++ b/easybuild/easyconfigs/b/Biopython/Biopython-1.76-foss-2023a-Python-2.7.18.eb
@@ -1,11 +1,8 @@
-# Updated from previous easyconfig
-# Author: Robert Mijakovic <robert.mijakovic@lxp.lu>
-# Update: Pavel Tománek (INUITS)
-
 easyblock = 'PythonPackage'
 
 name = 'Biopython'
-version = '1.84'
+version = '1.76'
+versionsuffix = '-Python-%(pyver)s'
 
 homepage = 'https://www.biopython.org'
 description = """Biopython is a set of freely available tools for biological
@@ -14,15 +11,15 @@ description = """Biopython is a set of freely available tools for biological
  applications which address the needs of current and future work in
  bioinformatics. """
 
-toolchain = {'name': 'foss', 'version': '2023b'}
+toolchain = {'name': 'foss', 'version': '2023a'}
 
 source_urls = ['https://biopython.org/DIST']
 sources = [SOURCELOWER_TAR_GZ]
-checksums = ['60fbe6f996e8a6866a42698c17e552127d99a9aab3259d6249fbaabd0e0cc7b4']
+checksums = ['3873cb98dad5e28d5e3f2215a012565345a398d3d2c4eebf7cd701757b828c72']
 
 dependencies = [
-    ('Python', '3.11.5'),
-    ('SciPy-bundle', '2023.11'),
+    ('Python', '2.7.18'),
+    ('numpy', '1.16.6', versionsuffix),
 ]
 
 download_dep_fail = True

Diff against Biopython-1.83-foss-2023a.eb

easybuild/easyconfigs/b/Biopython/Biopython-1.83-foss-2023a.eb

diff --git a/easybuild/easyconfigs/b/Biopython/Biopython-1.83-foss-2023a.eb b/easybuild/easyconfigs/b/Biopython/Biopython-1.76-foss-2023a-Python-2.7.18.eb
index 70b13923d3..d063a9d25f 100644
--- a/easybuild/easyconfigs/b/Biopython/Biopython-1.83-foss-2023a.eb
+++ b/easybuild/easyconfigs/b/Biopython/Biopython-1.76-foss-2023a-Python-2.7.18.eb
@@ -1,11 +1,8 @@
-# Updated from previous easyconfig
-# Author: Robert Mijakovic <robert.mijakovic@lxp.lu>
-# Update: Pavel Tománek (INUITS)
-
 easyblock = 'PythonPackage'
 
 name = 'Biopython'
-version = '1.83'
+version = '1.76'
+versionsuffix = '-Python-%(pyver)s'
 
 homepage = 'https://www.biopython.org'
 description = """Biopython is a set of freely available tools for biological
@@ -18,11 +15,11 @@ toolchain = {'name': 'foss', 'version': '2023a'}
 
 source_urls = ['https://biopython.org/DIST']
 sources = [SOURCELOWER_TAR_GZ]
-checksums = ['78e6bfb78de63034037afd35fe77cb6e0a9e5b62706becf78a7d922b16ed83f7']
+checksums = ['3873cb98dad5e28d5e3f2215a012565345a398d3d2c4eebf7cd701757b828c72']
 
 dependencies = [
-    ('Python', '3.11.3'),
-    ('SciPy-bundle', '2023.07'),
+    ('Python', '2.7.18'),
+    ('numpy', '1.16.6', versionsuffix),
 ]
 
 download_dep_fail = True

[PetrKralCZ]

@boegelbot please test @ jsc-zen3

[boegelbot]

@PetrKralCZ: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=22406 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_22406 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

• exit code: 0
• output:

Submitted batch job 5808

Test results coming soon (I hope)...

Details

- notification for comment with ID 2687241525 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[boegelbot]

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/f07b3b09bddbf30e75f21896b9038274 for a full test report.

[branfosj]

Test report by @branfosj
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
bear-pg0105u03a - Linux RHEL 8.10, x86_64, Intel(R) Xeon(R) Platinum 8360Y CPU @ 2.40GHz (icelake), Python 3.6.8
See https://gist.github.com/branfosj/d29effffd6fe72c149d70f2ddea500d7 for a full test report.

[branfosj]

Going in, thanks @PetrKralCZ!