{bio}[foss/2023a] QUAST v5.2.0 w/ Python 2.7.18

[PetrKralCZ]

No description provided.

[github-actions]

Updated software QUAST-5.2.0-foss-2023a-Python-2.7.18.eb

Diff against QUAST-5.2.0-gfbf-2023b.eb

easybuild/easyconfigs/q/QUAST/QUAST-5.2.0-gfbf-2023b.eb

diff --git a/easybuild/easyconfigs/q/QUAST/QUAST-5.2.0-gfbf-2023b.eb b/easybuild/easyconfigs/q/QUAST/QUAST-5.2.0-foss-2023a-Python-2.7.18.eb
index dd6df4bb5e..77f2735003 100644
--- a/easybuild/easyconfigs/q/QUAST/QUAST-5.2.0-gfbf-2023b.eb
+++ b/easybuild/easyconfigs/q/QUAST/QUAST-5.2.0-foss-2023a-Python-2.7.18.eb
@@ -2,27 +2,35 @@ easyblock = 'PythonBundle'
 
 name = 'QUAST'
 version = '5.2.0'
+versionsuffix = '-Python-%(pyver)s'
 
 homepage = 'https://github.com/ablab/quast'
 description = """QUAST evaluates genome assemblies by computing various metrics.
 It works both with and without reference genomes. The tool accepts multiple
 assemblies, thus is suitable for comparison."""
 
-toolchain = {'name': 'gfbf', 'version': '2023b'}
+toolchain = {'name': 'foss', 'version': '2023a'}
 toolchainopts = {'pic': True}
 
 dependencies = [
-    ('Python', '3.11.5'),
-    ('Perl', '5.38.0'),
-    ('matplotlib', '3.8.2'),
+    ('Python', '2.7.18'),
+    ('Perl', '5.36.1'),
+    ('matplotlib', '2.2.5', versionsuffix),
     ('Java', '11', '', SYSTEM),
-    ('Boost', '1.83.0'),
+    ('Boost', '1.82.0'),
 ]
 
 use_pip = True
 
 github_account = 'ablab'
 exts_list = [
+    ('joblib', '0.14.1', {
+        'source_tmpl': SOURCE_WHL,
+        'checksums': ['bdb4fd9b72915ffb49fde2229ce482dd7ae79d842ed8c2b4c932441495af1403'],
+    }),
+    ('simplejson', '3.20.1', {
+        'checksums': ['e64139b4ec4f1f24c142ff7dcafe55a22b811a74d86d66560c8815687143037d'],
+    }),
     (name, version, {
         'source_urls': [GITHUB_LOWER_SOURCE],
         'sources': ['%(namelower)s_%(version)s.tar.gz'],

Diff against QUAST-5.2.0-gfbf-2023a.eb

easybuild/easyconfigs/q/QUAST/QUAST-5.2.0-gfbf-2023a.eb

diff --git a/easybuild/easyconfigs/q/QUAST/QUAST-5.2.0-gfbf-2023a.eb b/easybuild/easyconfigs/q/QUAST/QUAST-5.2.0-foss-2023a-Python-2.7.18.eb
index 2d46e6cf6b..77f2735003 100644
--- a/easybuild/easyconfigs/q/QUAST/QUAST-5.2.0-gfbf-2023a.eb
+++ b/easybuild/easyconfigs/q/QUAST/QUAST-5.2.0-foss-2023a-Python-2.7.18.eb
@@ -2,19 +2,20 @@ easyblock = 'PythonBundle'
 
 name = 'QUAST'
 version = '5.2.0'
+versionsuffix = '-Python-%(pyver)s'
 
 homepage = 'https://github.com/ablab/quast'
 description = """QUAST evaluates genome assemblies by computing various metrics.
 It works both with and without reference genomes. The tool accepts multiple
 assemblies, thus is suitable for comparison."""
 
-toolchain = {'name': 'gfbf', 'version': '2023a'}
+toolchain = {'name': 'foss', 'version': '2023a'}
 toolchainopts = {'pic': True}
 
 dependencies = [
-    ('Python', '3.11.3'),
+    ('Python', '2.7.18'),
     ('Perl', '5.36.1'),
-    ('matplotlib', '3.7.2'),
+    ('matplotlib', '2.2.5', versionsuffix),
     ('Java', '11', '', SYSTEM),
     ('Boost', '1.82.0'),
 ]
@@ -23,6 +24,13 @@ use_pip = True
 
 github_account = 'ablab'
 exts_list = [
+    ('joblib', '0.14.1', {
+        'source_tmpl': SOURCE_WHL,
+        'checksums': ['bdb4fd9b72915ffb49fde2229ce482dd7ae79d842ed8c2b4c932441495af1403'],
+    }),
+    ('simplejson', '3.20.1', {
+        'checksums': ['e64139b4ec4f1f24c142ff7dcafe55a22b811a74d86d66560c8815687143037d'],
+    }),
     (name, version, {
         'source_urls': [GITHUB_LOWER_SOURCE],
         'sources': ['%(namelower)s_%(version)s.tar.gz'],

Diff against QUAST-5.2.0-foss-2022a.eb

easybuild/easyconfigs/q/QUAST/QUAST-5.2.0-foss-2022a.eb

diff --git a/easybuild/easyconfigs/q/QUAST/QUAST-5.2.0-foss-2022a.eb b/easybuild/easyconfigs/q/QUAST/QUAST-5.2.0-foss-2023a-Python-2.7.18.eb
index d3589c364c..77f2735003 100644
--- a/easybuild/easyconfigs/q/QUAST/QUAST-5.2.0-foss-2022a.eb
+++ b/easybuild/easyconfigs/q/QUAST/QUAST-5.2.0-foss-2023a-Python-2.7.18.eb
@@ -2,27 +2,35 @@ easyblock = 'PythonBundle'
 
 name = 'QUAST'
 version = '5.2.0'
+versionsuffix = '-Python-%(pyver)s'
 
 homepage = 'https://github.com/ablab/quast'
 description = """QUAST evaluates genome assemblies by computing various metrics.
 It works both with and without reference genomes. The tool accepts multiple
 assemblies, thus is suitable for comparison."""
 
-toolchain = {'name': 'foss', 'version': '2022a'}
+toolchain = {'name': 'foss', 'version': '2023a'}
 toolchainopts = {'pic': True}
 
 dependencies = [
-    ('Python', '3.10.4'),
-    ('Perl', '5.34.1'),
-    ('matplotlib', '3.5.2'),
+    ('Python', '2.7.18'),
+    ('Perl', '5.36.1'),
+    ('matplotlib', '2.2.5', versionsuffix),
     ('Java', '11', '', SYSTEM),
-    ('Boost', '1.79.0'),
+    ('Boost', '1.82.0'),
 ]
 
 use_pip = True
 
 github_account = 'ablab'
 exts_list = [
+    ('joblib', '0.14.1', {
+        'source_tmpl': SOURCE_WHL,
+        'checksums': ['bdb4fd9b72915ffb49fde2229ce482dd7ae79d842ed8c2b4c932441495af1403'],
+    }),
+    ('simplejson', '3.20.1', {
+        'checksums': ['e64139b4ec4f1f24c142ff7dcafe55a22b811a74d86d66560c8815687143037d'],
+    }),
     (name, version, {
         'source_urls': [GITHUB_LOWER_SOURCE],
         'sources': ['%(namelower)s_%(version)s.tar.gz'],

[PetrKralCZ]

@boegelbot please test @ jsc-zen3

[boegelbot]

@PetrKralCZ: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=22392 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_22392 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

• exit code: 0
• output:

Submitted batch job 5778

Test results coming soon (I hope)...

Details

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Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[boegelbot]

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/c3651cb6d3dc6dfbb4839a7a06c401ab for a full test report.

[branfosj]

Test report by @branfosj
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
bear-pg0105u03a - Linux RHEL 8.10, x86_64, Intel(R) Xeon(R) Platinum 8360Y CPU @ 2.40GHz (icelake), Python 3.6.8
See https://gist.github.com/branfosj/b21b317af70367026d168c2359b8513e for a full test report.

[branfosj]

Going in, thanks @PetrKralCZ!