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{bio,lang}[GCC/12.3.0,GCCcore/12.3.0] Pysam v0.20.0, Cython v0.29.37 w/ Python 2.7.18 #22354
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Merged
boegel
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easybuilders:develop
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PetrKralCZ:20250221110429_new_pr_Pysam0200
Feb 24, 2025
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41 changes: 41 additions & 0 deletions
41
easybuild/easyconfigs/c/Cython/Cython-0.29.37-GCCcore-12.3.0-Python-2.7.18.eb
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,41 @@ | ||
| easyblock = 'PythonPackage' | ||
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| name = 'Cython' | ||
| version = '0.29.37' | ||
| versionsuffix = '-Python-%(pyver)s' | ||
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| homepage = 'https://cython.org/' | ||
| description = """ | ||
| Cython is an optimising static compiler for both the Python programming | ||
| language and the extended Cython programming language (based on Pyrex). | ||
| """ | ||
| docurls = [ | ||
| 'https://cython.org/#documentation', | ||
| 'https://github.com/cython/cython', | ||
| ] | ||
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| toolchain = {'name': 'GCCcore', 'version': '12.3.0'} | ||
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| sources = [SOURCE_WHL] | ||
| checksums = ['95f1d6a83ef2729e67b3fa7318c829ce5b07ac64c084cd6af11c228e0364662c'] | ||
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| builddependencies = [ | ||
| ('binutils', '2.40'), | ||
| ] | ||
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| dependencies = [ | ||
| ('Python', '2.7.18'), | ||
| ] | ||
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| download_dep_fail = True | ||
| use_pip = True | ||
| sanity_pip_check = True | ||
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| sanity_check_paths = { | ||
| 'files': ['bin/cygdb', 'bin/cython', 'bin/cythonize'], | ||
| 'dirs': ['lib/python%(pyshortver)s/site-packages'], | ||
| } | ||
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| sanity_check_commands = ["cython --version"] | ||
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| moduleclass = 'lang' | ||
31 changes: 31 additions & 0 deletions
31
easybuild/easyconfigs/p/Pysam/Pysam-0.20.0-GCC-12.3.0-Python-2.7.18.eb
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,31 @@ | ||
| easyblock = 'PythonPackage' | ||
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| name = 'Pysam' | ||
| version = '0.20.0' | ||
| versionsuffix = '-Python-%(pyver)s' | ||
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| homepage = 'https://github.com/pysam-developers/pysam' | ||
| description = """Pysam is a python module for reading and manipulating Samfiles. | ||
| It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.""" | ||
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| toolchain = {'name': 'GCC', 'version': '12.3.0'} | ||
| toolchainopts = {'pic': True} | ||
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| source_urls = ['https://github.com/pysam-developers/pysam/archive/'] | ||
| sources = ['v%(version)s.tar.gz'] | ||
| checksums = ['5a25d95b986c2cb9f5040b9df4e1d93ce9a8bc3af5a956b1317416ed05269f60'] | ||
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| dependencies = [ | ||
| ('Python', '2.7.18'), | ||
| ('Cython', '0.29.37', versionsuffix), | ||
| ('ncurses', '6.4'), | ||
| ('cURL', '8.0.1'), | ||
| ('XZ', '5.4.2'), | ||
| ] | ||
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| download_dep_fail = True | ||
| use_pip = True | ||
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| sanity_pip_check = True | ||
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| moduleclass = 'bio' |
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@PetrKralCZ Any reason why we're not building from source here, using
SOURCE_TAR_GZ?There was a problem hiding this comment.
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Whenever there is
none-anywheel available, I use that. Is that wrong?There was a problem hiding this comment.
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It should be fine, I mostly wondered why the
SOURCE_TAR_GZis no longer used as it was before