add missing dependency on pybind11 for contourpy in matplotlib v3.9.2

[lexming]

(created using eb --new-pr)

Fixes:

== 2025-02-12 10:57:50,593 run.py:598 INFO Output of '/user/brussel/101/vsc10122/easybuild/install/skylake/software/Python/3.12.3-GCCcore-13.3.0/bin/python ...' shell command (stdout + stderr):
Processing /rhea/scratch/brussel/vo/000/bvo00005/vsc10122/easybuild/install/skylake/build/matplotlib/3.9.2/gfbf-2024a/contourpy/contourpy-1.3.0
  Preparing metadata (pyproject.toml): started
  Preparing metadata (pyproject.toml): finished with status 'error'
  error: subprocess-exited-with-error

  × Preparing metadata (pyproject.toml) did not run successfully.
  │ exit code: 1
  ╰─> [22 lines of output]
      + meson setup /rhea/scratch/brussel/vo/000/bvo00005/vsc10122/easybuild/install/skylake/build/matplotlib/3.9.2/gfbf-2024a/contourpy/contourpy-1.3.0 /rhea/scratch/brussel/vo/000/bvo00005/vsc10122/easybuild/install/skylake/build/matplotlib/3.9.2/gfbf-2024a/contourpy/contourpy-1.3.0/.mesonpy-9374gj41 -Dbuildtype=release -Db_ndebug=if-release -Db_vscrt=md --vsenv --native-file=/rhea/scratch/brussel/vo/000/bvo00005/vsc10122/easybuild/install/skylake/build/matplotlib/3.9.2/gfbf-2024a/contourpy/contourpy-1.3.0/.mesonpy-9374gj41/meson-python-native-file.ini
      The Meson build system
      Version: 1.4.0
      Source dir: /rhea/scratch/brussel/vo/000/bvo00005/vsc10122/easybuild/install/skylake/build/matplotlib/3.9.2/gfbf-2024a/contourpy/contourpy-1.3.0
      Build dir: /rhea/scratch/brussel/vo/000/bvo00005/vsc10122/easybuild/install/skylake/build/matplotlib/3.9.2/gfbf-2024a/contourpy/contourpy-1.3.0/.mesonpy-9374gj41
      Build type: native build
      Project name: contourpy
      Project version: 1.3.0
      C++ compiler for the host machine: g++ (gcc 13.3.0 "g++ (GCC) 13.3.0")
      C++ linker for the host machine: g++ ld.bfd 2.42
      Host machine cpu family: x86_64
      Host machine cpu: x86_64
      Program python found: YES (/user/brussel/101/vsc10122/easybuild/install/skylake/software/Python/3.12.3-GCCcore-13.3.0/bin/python)
      Found pkg-config: YES (/user/brussel/101/vsc10122/easybuild/install/skylake/software/pkgconf/2.2.0-GCCcore-13.3.0/bin/pkgconf) 2.2.0
      pybind11-config found: NO
      Did not find CMake 'cmake'
      Found CMake: NO
      Run-time dependency pybind11 found: NO (tried pkgconfig and config-tool)

      ../meson.build:23:15: ERROR: Dependency "pybind11" not found, tried pkgconfig and config-tool

[boegel]

@lexming Any idea why this only started happening recently? I guess it's due to:

• {lang}[gfbf,2024a] SciPy-bundle v2024.05 move pybind11 dependency to builddependencies #22170

[boegel]

@boegelbot please test @ jsc-zen3
EB_BRANCH=5.0.x

[boegelbot]

@boegel: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ "5.0.x" != 'develop' ]]; then EB_BRANCH="5.0.x" ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/"5.0.x" source init_env_easybuild_develop.sh; fi; EB_PR=22294 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH="5.0.x" /opt/software/slurm/bin/sbatch --job-name test_PR_22294 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

• exit code: 0
• output:

Submitted batch job 5705

Test results coming soon (I hope)...

Details

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Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[boegelbot]

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/8ca05419f31ea2d75252e8120f4fcb8e for a full test report.

[boegel]

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node3515.doduo.os - Linux RHEL 8.8, x86_64, AMD EPYC 7552 48-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/boegel/ac71c7ae2264f9aa8fd4f2fe80069e1f for a full test report.

[boegel]

Going in, thanks @lexming!

[boegel]

Also making this fix in develop branch, since that's where pybind11 was changed from runtime dependency to build-only dependency in SciPy-bundle, so people can at least use --from-pr to pick up the fix in the short term:

• add missing dependency on pybind11 for contourpy in matplotlib v3.9.2 #22301