Skip to content

{vis}[foss/2023b] ETE v3.1.3#22019

Merged
bedroge merged 5 commits intoeasybuilders:developfrom
julianmorillo:ETE
Jun 17, 2025
Merged

{vis}[foss/2023b] ETE v3.1.3#22019
bedroge merged 5 commits intoeasybuilders:developfrom
julianmorillo:ETE

Conversation

@julianmorillo
Copy link
Contributor

It also includes dependencies PyQt-builder-1.15.4-GCCcore-13.2.0.eb and PyQt5-5.15.10-GCCcore-13.2.0.eb

PyQt-builder-1.15.4-GCCcore-13.2.0.eb, PyQt5-5.15.10-GCCcore-13.2.0.eb
@github-actions
Copy link

github-actions bot commented Dec 12, 2024

Updated software ETE-3.1.3-foss-2023b.eb

Diff against ETE-3.1.3-foss-2024a.eb

easybuild/easyconfigs/e/ETE/ETE-3.1.3-foss-2024a.eb

diff --git a/easybuild/easyconfigs/e/ETE/ETE-3.1.3-foss-2024a.eb b/easybuild/easyconfigs/e/ETE/ETE-3.1.3-foss-2023b.eb
index 2e03e3c80c..fe56c4decd 100644
--- a/easybuild/easyconfigs/e/ETE/ETE-3.1.3-foss-2024a.eb
+++ b/easybuild/easyconfigs/e/ETE/ETE-3.1.3-foss-2023b.eb
@@ -6,7 +6,7 @@ version = '3.1.3'
 homepage = 'http://etetoolkit.org'
 description = """A Python framework for the analysis and visualization of trees"""
 
-toolchain = {'name': 'foss', 'version': '2024a'}
+toolchain = {'name': 'foss', 'version': '2023b'}
 
 source_urls = ['https://pypi.python.org/packages/source/e/ete3']
 sources = ['ete3-%(version)s.tar.gz']
@@ -17,10 +17,10 @@ checksums = [
 ]
 
 dependencies = [
-    ('Python', '3.12.3'),
-    ('SciPy-bundle', '2024.05'),
-    ('lxml', '5.3.0'),
-    ('PyQt5', '5.15.11'),
+    ('Python', '3.11.5'),
+    ('SciPy-bundle', '2023.11'),
+    ('lxml', '4.9.3'),
+    ('PyQt5', '5.15.10'),
 ]
 
 options = {'modulename': 'ete3'}
Diff against ETE-3.1.3-foss-2023a.eb

easybuild/easyconfigs/e/ETE/ETE-3.1.3-foss-2023a.eb

diff --git a/easybuild/easyconfigs/e/ETE/ETE-3.1.3-foss-2023a.eb b/easybuild/easyconfigs/e/ETE/ETE-3.1.3-foss-2023b.eb
index ed64b3d7aa..fe56c4decd 100644
--- a/easybuild/easyconfigs/e/ETE/ETE-3.1.3-foss-2023a.eb
+++ b/easybuild/easyconfigs/e/ETE/ETE-3.1.3-foss-2023b.eb
@@ -6,7 +6,7 @@ version = '3.1.3'
 homepage = 'http://etetoolkit.org'
 description = """A Python framework for the analysis and visualization of trees"""
 
-toolchain = {'name': 'foss', 'version': '2023a'}
+toolchain = {'name': 'foss', 'version': '2023b'}
 
 source_urls = ['https://pypi.python.org/packages/source/e/ete3']
 sources = ['ete3-%(version)s.tar.gz']
@@ -17,9 +17,9 @@ checksums = [
 ]
 
 dependencies = [
-    ('Python', '3.11.3'),
-    ('SciPy-bundle', '2023.07'),
-    ('lxml', '4.9.2'),
+    ('Python', '3.11.5'),
+    ('SciPy-bundle', '2023.11'),
+    ('lxml', '4.9.3'),
     ('PyQt5', '5.15.10'),
 ]
 
Diff against ETE-3.1.3-foss-2022b.eb

easybuild/easyconfigs/e/ETE/ETE-3.1.3-foss-2022b.eb

diff --git a/easybuild/easyconfigs/e/ETE/ETE-3.1.3-foss-2022b.eb b/easybuild/easyconfigs/e/ETE/ETE-3.1.3-foss-2023b.eb
index 581339a790..fe56c4decd 100644
--- a/easybuild/easyconfigs/e/ETE/ETE-3.1.3-foss-2022b.eb
+++ b/easybuild/easyconfigs/e/ETE/ETE-3.1.3-foss-2023b.eb
@@ -6,7 +6,7 @@ version = '3.1.3'
 homepage = 'http://etetoolkit.org'
 description = """A Python framework for the analysis and visualization of trees"""
 
-toolchain = {'name': 'foss', 'version': '2022b'}
+toolchain = {'name': 'foss', 'version': '2023b'}
 
 source_urls = ['https://pypi.python.org/packages/source/e/ete3']
 sources = ['ete3-%(version)s.tar.gz']
@@ -17,10 +17,10 @@ checksums = [
 ]
 
 dependencies = [
-    ('Python', '3.10.8'),
-    ('SciPy-bundle', '2023.02'),
-    ('lxml', '4.9.2'),
-    ('PyQt5', '5.15.7'),
+    ('Python', '3.11.5'),
+    ('SciPy-bundle', '2023.11'),
+    ('lxml', '4.9.3'),
+    ('PyQt5', '5.15.10'),
 ]
 
 options = {'modulename': 'ete3'}

@bedroge
Copy link
Contributor

bedroge commented Jun 17, 2025

@boegelbot please test @ jsc-zen3

@bedroge bedroge changed the title Add easyconfig ETE-3.1.3-foss-2023b.eb {vis}[foss/2023b] ETE v3.1.3 Jun 17, 2025
@boegelbot
Copy link
Collaborator

@bedroge: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=22019 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_22019 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 6828

Test results coming soon (I hope)...

Details

- notification for comment with ID 2979328752 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

@boegelbot
Copy link
Collaborator

Test report by @boegelbot
FAILED
Build succeeded for 0 out of 2 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/3f9d7ca79aa7979b1c6f57983fdb0147 for a full test report.

@bedroge
Copy link
Contributor

bedroge commented Jun 17, 2025

@boegelbot please test @ jsc-zen3

@boegelbot
Copy link
Collaborator

@bedroge: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=22019 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_22019 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 6837

Test results coming soon (I hope)...

Details

- notification for comment with ID 2979969055 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

@boegelbot
Copy link
Collaborator

Test report by @boegelbot
FAILED
Build succeeded for 0 out of 2 (1 easyconfigs in total)
jsczen3c3.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/db1cb5c33eb22685292480603854f55d for a full test report.

@bedroge
Copy link
Contributor

bedroge commented Jun 17, 2025

@boegelbot please test @ jsc-zen3
EB_ARGS="--include-easyblocks-from-pr 3775"

@boegelbot
Copy link
Collaborator

@bedroge: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=22019 EB_ARGS="--include-easyblocks-from-pr 3775" EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_22019 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

  • exit code: 0
  • output:
Submitted batch job 6838

Test results coming soon (I hope)...

Details

- notification for comment with ID 2980120030 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

@boegelbot
Copy link
Collaborator

Test report by @boegelbot
Using easyblocks from PR(s) easybuilders/easybuild-easyblocks#3775
SUCCESS
Build succeeded for 2 out of 2 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/4420ed670d61211db078da7f490c973a for a full test report.

Copy link
Contributor

@bedroge bedroge left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Looks good to me.

@bedroge bedroge added the 2023b label Jun 17, 2025
@bedroge bedroge added this to the next release (5.1.1?) milestone Jun 17, 2025
@bedroge
Copy link
Contributor

bedroge commented Jun 17, 2025

Going in, thanks @julianmorillo!

@bedroge bedroge merged commit fdd0cd8 into easybuilders:develop Jun 17, 2025
8 checks passed
@julianmorillo julianmorillo deleted the ETE branch June 17, 2025 12:49
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Projects

None yet

Development

Successfully merging this pull request may close these issues.

3 participants