{cae}[foss/2024a] OpenFOAM v12, ParaView v5.13.1, Zoltan v3.901

easybuild/easyconfigs/o/OpenFOAM/OpenFOAM-12-foss-2024a.eb

@@ -0,0 +1,40 @@
+name = 'OpenFOAM'
+version = '12'
+
+homepage = 'https://www.openfoam.org/'
+description = """OpenFOAM is a free, open source CFD software package.
+ OpenFOAM has an extensive range of features to solve anything from complex fluid flows
+ involving chemical reactions, turbulence and heat transfer,
+ to solid dynamics and electromagnetics."""
+
+toolchain = {'name': 'foss', 'version': '2024a'}
+toolchainopts = {'vectorize': False}
+
+source_urls = ['https://github.com/OpenFOAM/OpenFOAM-%(version_major)s/archive']
+sources = ['version-%(version)s.tar.gz']
+patches = ['OpenFOAM-12-ThirdParty.patch']
+checksums = [
+    {'version-%(version)s.tar.gz': 
+     'e59fad54c62e64f1bb89dbaebe5f99a76dc0a6a91d9aad86042a7c4cef6d0744'},
+    {'OpenFOAM-12-ThirdParty.patch': 
+     'b8a9abf3b8479d32d87654d833501f54abe57ceb9f06f7d2412a3e52d20108ec'},
+]
+
+builddependencies = [
+    ('Bison', '3.8.2'),
+    ('CMake', '3.29.3'),
+    ('flex', '2.6.4'),
+]
+
+dependencies = [
+    ('ncurses', '6.5'),
+    # OpenFOAM requires 64 bit METIS using 32 bit indexes (array indexes)
+    ('METIS', '5.1.0'),
+    ('SCOTCH', '7.0.5'),
+    ('CGAL', '5.6.1'),
+    ('ParaView', '5.13.1'),
+    ('gnuplot', '6.0.1'),
+    ('Zoltan', '3.901'),
+]
+
+moduleclass = 'cae'

easybuild/easyconfigs/o/OpenMPI/OpenMPI-5.0.3-GCC-13.3.0.eb

@@ -8,11 +8,16 @@ toolchain = {'name': 'GCC', 'version': '13.3.0'}
 
 source_urls = ['https://www.open-mpi.org/software/ompi/v%(version_major_minor)s/downloads']
 sources = [SOURCELOWER_TAR_BZ2]
-patches = [('OpenMPI-5.0.2_build-with-internal-cuda-header.patch', 1)]
+patches = [
+    ('OpenMPI-5.0.2_build-with-internal-cuda-header.patch', 1),
+    ('OpenMPI-5.0.3_fix_c90_compliance.patch'),
+]
 checksums = [
     {'openmpi-5.0.3.tar.bz2': '990582f206b3ab32e938aa31bbf07c639368e4405dca196fabe7f0f76eeda90b'},
     {'OpenMPI-5.0.2_build-with-internal-cuda-header.patch':
      'f52dc470543f35efef10d651dd159c771ae25f8f76a420d20d87abf4dc769ed7'},
+    {'OpenMPI-5.0.3_fix_c90_compliance.patch':
+     'ece1dff504673179daf298f74c978d31132fcde71af9eca38a530b30aec85cca'},
 ]
 
 builddependencies = [

easybuild/easyconfigs/o/OpenMPI/OpenMPI-5.0.3_fix_c90_compliance.patch

@@ -0,0 +1,300 @@
+# Remove all //-style comments, making this file safe to use with C89-style applications
+# Based on https://github.com/open-mpi/ompi/pull/12830
+From d5e2855bd983db1cce7172cbf87ae47731729316 Mon Sep 17 00:00:00 2001
+From: Jeff Squyres <jeff@squyres.com>
+Date: Sat, 28 Sep 2024 07:44:02 -0400
+Subject: [PATCH] Update opal_portable_platform_real.h from upstream gasnet
+
+Pull update from
+https://bitbucket.org/berkeleylab/gasnet/src/stable/other/gasnet_portable_platform.h
+at git hash a90966674.  This update brings in two things:
+
+1. Remove the need for the #define workarounds in
+   opal/include/opal/opal_portable_platform.h
+2. Remove all //-style comments, making this file safe to use with
+   C89-style applications (per
+   https://github.com/open-mpi/ompi/issues/12710).
+
+Many thanks to the gasnet team for including these changes in their
+upstream repo.
+
+Note that we still need the #ifndef SIZEOF_VOID_P protection in mpi.h.
+This commit also makes a minor update in mpi.h[.in] to prefix an
+OMPI-specific #define with "OMPI_".  No one has ever complained about
+this un-prefixed macro, but prefixing it it felt like the Right Thing
+to do while mucking around with other portable_platform stuff.
+
+Signed-off-by: Jeff Squyres <jeff@squyres.com>
+(cherry picked from commit 50c05da32ceb7d375a590448122da9079b743686)
+---
+ ompi/include/Makefile.am                      |  5 +-
+ ompi/include/mpi.h.in                         | 13 +---
+ opal/include/opal/opal_portable_platform.h    | 13 ++--
+ .../opal/opal_portable_platform_real.h        | 68 +++++++++++++------
+ 4 files changed, 57 insertions(+), 42 deletions(-)
+
+diff --git a/ompi/include/Makefile.am b/ompi/include/Makefile.am
+index 05db27ced50..9b052b94920 100644
+--- a/ompi/include/Makefile.am
++++ b/ompi/include/Makefile.am
+@@ -47,8 +47,9 @@ include_HEADERS += \
+ endif
+
+ # These files are always installed in $(includedir), but shouldn't be
+-# shipped since they are generated by configure from their .in
+-# counterparts (which AM automatically ships).
++# shipped since they are generated by configure from .in counterparts
++# (which AM automatically ships) or other sources (which are shipped
++# by other Makefile.am's).
+ nodist_include_HEADERS = \
+         mpi.h \
+         mpi-ext.h \
+diff --git a/ompi/include/mpi.h.in b/ompi/include/mpi.h.in
+index b23c3337b72..23114892560 100644
+--- a/ompi/include/mpi.h.in
++++ b/ompi/include/mpi.h.in
+@@ -268,22 +268,15 @@
+       * hacks to eliminate warnings in the portable_platform.h file.
+       */
+ #    ifndef SIZEOF_VOID_P
+-#    define CLEANUP_SIZEOF_VOID_P 1
++#    define OMPI_CLEANUP_SIZEOF_VOID_P 1
+ #    define SIZEOF_VOID_P OPAL_SIZEOF_VOID_P
+ #    else
+-#    define CLEANUP_SIZEOF_VOID_P 0
+-#    endif
+-
+-#    ifndef _PORTABLE_PLATFORM_H
+-#    define _PORTABLE_PLATFORM_H 0
+-#    endif
+-#    ifndef PLATFORM_HEADER_VERSION
+-#    define PLATFORM_HEADER_VERSION 0
++#    define OMPI_CLEANUP_SIZEOF_VOID_P 0
+ #    endif
+
+ #    include "mpi_portable_platform.h"
+
+-#if CLEANUP_SIZEOF_VOID_P
++#if OMPI_CLEANUP_SIZEOF_VOID_P
+ #undef SIZEOF_VOID_P
+ #endif
+
+diff --git a/opal/include/opal/opal_portable_platform.h b/opal/include/opal/opal_portable_platform.h
+index fc09d04fdaf..7924c530baf 100644
+--- a/opal/include/opal/opal_portable_platform.h
++++ b/opal/include/opal/opal_portable_platform.h
+@@ -1,6 +1,7 @@
+ /*
+  * Copyright (c) 2021      Amazon.com, Inc. or its affiliates.  All Rights
+  *                         reserved.
++ * Copyright (c) 2024      Jeffrey M. Squyres.  All rights reserved.
+  * $COPYRIGHT$
+  *
+  * Additional copyrights may follow
+@@ -8,19 +9,15 @@
+  * $HEADER$
+  *
+  * Wrapper around GASNet's gasnet_portable_platform.h to avoid
+- * compiler warnings
++ * compiler warnings.  This wrapper used to be necessary to add some
++ * additional #defines, but those issues have now been resolved
++ * upstream at gasnet.  However, we left this wrapper file just to be
++ * able to handle any future workarounds, if necessary.
+  */
+
+ #ifndef OPAL_PORTABLE_PLATFORM_H
+ #define OPAL_PORTABLE_PLATFORM_H 1
+
+-#ifndef _PORTABLE_PLATFORM_H
+-#define _PORTABLE_PLATFORM_H 0
+-#endif
+-#ifndef PLATFORM_HEADER_VERSION
+-#define PLATFORM_HEADER_VERSION 0
+-#endif
+-
+ #include "opal/opal_portable_platform_real.h"
+
+ #endif
+diff --git a/opal/include/opal/opal_portable_platform_real.h b/opal/include/opal/opal_portable_platform_real.h
+index 170c207409c..6f21dbfa8d4 100644
+--- a/opal/include/opal/opal_portable_platform_real.h
++++ b/opal/include/opal/opal_portable_platform_real.h
+@@ -28,10 +28,11 @@
+  */
+ /* Publish and enforce version number for the public interface to this header */
+ /* YOU ARE NOT PERMITTED TO CHANGE THIS SECTION WITHOUT DIRECT APPROVAL FROM DAN BONACHEA */
+-#if _PORTABLE_PLATFORM_H != PLATFORM_HEADER_VERSION \
+-     || PLATFORM_HEADER_VERSION < 16
++#if !defined(_PORTABLE_PLATFORM_H) || !defined(PLATFORM_HEADER_VERSION) \
++     || _PORTABLE_PLATFORM_H != PLATFORM_HEADER_VERSION \
++     || PLATFORM_HEADER_VERSION < 22
+ #undef  PLATFORM_HEADER_VERSION 
+-#define PLATFORM_HEADER_VERSION 16
++#define PLATFORM_HEADER_VERSION 22
+ #undef  _PORTABLE_PLATFORM_H
+ #define _PORTABLE_PLATFORM_H PLATFORM_HEADER_VERSION
+ /* End Header versioning handshake */
+@@ -115,14 +116,17 @@
+ #undef PLATFORM_COMPILER_UNKNOWN
+
+ #undef PLATFORM_OS_FAMILYNAME
++#undef PLATFORM_OS_SUBFAMILYNAME
+ #undef PLATFORM_OS_CATAMOUNT
+-#undef PLATFORM_OS_CNL
+ #undef PLATFORM_OS_BGP
+ #undef PLATFORM_OS_BGQ
+-#undef PLATFORM_OS_WSL
+ #undef PLATFORM_OS_K42
+ #undef PLATFORM_OS_UCLINUX
+ #undef PLATFORM_OS_LINUX
++#undef PLATFORM_OS_CNL
++#undef PLATFORM_OS_SUBFAMILY_CNL
++#undef PLATFORM_OS_WSL
++#undef PLATFORM_OS_SUBFAMILY_WSL
+ #undef PLATFORM_OS_BLRTS
+ #undef PLATFORM_OS_CYGWIN
+ #undef PLATFORM_OS_MSWINDOWS
+@@ -167,6 +171,7 @@
+ #undef PLATFORM_ARCH_AARCH64
+ #undef PLATFORM_ARCH_TILE
+ #undef PLATFORM_ARCH_S390
++#undef PLATFORM_ARCH_RISCV
+ #undef PLATFORM_ARCH_UNKNOWN
+
+ /* prevent known old/broken versions of this header from loading */
+@@ -291,7 +296,7 @@
+           PLATFORM_COMPILER_VERSION_INT(__PATHCC__,__PATHCC_MINOR__,__PATHCC_PATCHLEVEL__+0)
+   #define PLATFORM_COMPILER_VERSION_STR __PATHSCALE__
+
+-#elif defined(__NVCOMPILER) // Must occur prior to PGI and CLANG
++#elif defined(__NVCOMPILER) /* Must occur prior to PGI and CLANG */
+   #define PLATFORM_COMPILER_NVHPC  1
+   #define PLATFORM_COMPILER_FAMILYNAME NVHPC
+   #define PLATFORM_COMPILER_FAMILYID 20
+@@ -330,7 +335,7 @@
+       /* Include below might fail for ancient versions lacking this header, but testing shows it
+          works back to at least 5.1-3 (Nov 2003), and based on docs probably back to 3.2 (Sep 2000) */
+         #define PLATFORM_COMPILER_VERSION 0       
+-    #elif defined(__x86_64__) /* bug 1753 - 64-bit omp.h upgrade happened in <6.0-8,6.1-1] */
++    #elif defined(__x86_64__) /* bug 1753 - 64-bit omp.h upgrade happenned in <6.0-8,6.1-1] */
+       #include "omp.h"
+       #if defined(_PGOMP_H)
+         /* 6.1.1 or newer */
+@@ -341,7 +346,7 @@
+         #define PLATFORM_COMPILER_VERSION 0
+         #define PLATFORM_COMPILER_VERSION_STR "<=6.0-8"
+       #endif
+-    #else /* 32-bit omp.h upgrade happened in <5.2-4,6.0-8] */
++    #else /* 32-bit omp.h upgrade happenned in <5.2-4,6.0-8] */
+       #include "omp.h"
+       #if defined(_PGOMP_H)
+         /* 6.0-8 or newer */
+@@ -590,7 +595,7 @@
+     #define PLATFORM_COMPILER_VERSION_STR __clang_version__
+   #endif
+
+-// NOTE: PLATFORM_COMPILER_FAMILYID "20" is allocated to NVHPC, appearing earlier
++/* NOTE: PLATFORM_COMPILER_FAMILYID "20" is allocted to NVHPC, appearing earlier */
+
+ #else /* unknown compiler */
+   #define PLATFORM_COMPILER_UNKNOWN  1
+@@ -750,17 +755,17 @@
+    PLATFORM_OS_<family>:
+      defined to a positive value if OS belongs to a given family, undef otherwise
+    PLATFORM_OS_FAMILYNAME:
+-     unquoted token which provides the compiler family name
++     unquoted token which provides the OS family name
++
++   Some systems also define a subfamily:
++    PLATFORM_OS_SUBFAMILY_<subfamily>: positive value or undef
++    PLATFORM_OS_SUBFAMILYNAME: unquoted token for subfamily name or undef
+ */
+
+ #if defined(__LIBCATAMOUNT__) || defined(__QK_USER__)
+   #define PLATFORM_OS_CATAMOUNT 1
+   #define PLATFORM_OS_FAMILYNAME CATAMOUNT
+
+-#elif defined(__CRAYXT_COMPUTE_LINUX_TARGET)
+-  #define PLATFORM_OS_CNL 1
+-  #define PLATFORM_OS_FAMILYNAME CNL
+-
+ #elif defined(GASNETI_ARCH_BGP) || defined(__bgp__)
+   #define PLATFORM_OS_BGP 1
+   #define PLATFORM_OS_FAMILYNAME BGP
+@@ -769,10 +774,6 @@
+   #define PLATFORM_OS_BGQ 1
+   #define PLATFORM_OS_FAMILYNAME BGQ
+
+-#elif defined(GASNETI_ARCH_WSL)
+-  #define PLATFORM_OS_WSL 1
+-  #define PLATFORM_OS_FAMILYNAME WSL
+-
+ #elif defined(__K42)
+   #define PLATFORM_OS_K42 1
+   #define PLATFORM_OS_FAMILYNAME K42
+@@ -784,6 +785,14 @@
+ #elif defined(__linux) || defined(__linux__) || defined(__gnu_linux__)
+   #define PLATFORM_OS_LINUX 1
+   #define PLATFORM_OS_FAMILYNAME LINUX
++  #if defined(GASNETI_ARCH_WSL)
++    #define PLATFORM_OS_SUBFAMILY_WSL 1
++    #define PLATFORM_OS_SUBFAMILYNAME WSL
++  #elif defined(__CRAYXT_COMPUTE_LINUX_TARGET)
++    /* NOTE: As of 2022-07 this is ONLY defined for the Cray cc/CC wrappers, and not the raw PrgEnv compilers */
++    #define PLATFORM_OS_SUBFAMILY_CNL 1
++    #define PLATFORM_OS_SUBFAMILYNAME CNL
++  #endif
+
+ #elif defined(__blrts) || defined(__blrts__) || defined(__gnu_blrts__)
+   #define PLATFORM_OS_BLRTS 1
+@@ -1031,6 +1040,16 @@
+     #define _PLATFORM_ARCH_32 1
+   #endif
+
++#elif defined(__riscv)
++  #define PLATFORM_ARCH_RISCV 1
++  #define PLATFORM_ARCH_FAMILYNAME RISCV
++  #define _PLATFORM_ARCH_LITTLE_ENDIAN 1
++  #if __riscv_xlen == 32
++    #define _PLATFORM_ARCH_32 1
++  #else  /* (__riscv_xlen == 64) || (__riscv_xlen == 128) */
++    #define _PLATFORM_ARCH_64 1
++  #endif
++
+ #else /* unknown CPU */
+   #define PLATFORM_ARCH_UNKNOWN 1
+   #define PLATFORM_ARCH_FAMILYNAME UNKNOWN
+@@ -1128,16 +1147,21 @@ int main(void) {
+   PLATFORM_DISPX(COMPILER_VERSION);
+   PLATFORM_DISP(COMPILER_VERSION_STR);
+   PLATFORM_DISP(COMPILER_IDSTR);
+-  #if PLATFORM_COMPILER_C_LANGLVL
++  #ifdef PLATFORM_COMPILER_C_LANGLVL
+     PLATFORM_DISPI(COMPILER_C_LANGLVL);
+-  #elif PLATFORM_COMPILER_CXX_LANGLVL
++  #elif defined(PLATFORM_COMPILER_CXX_LANGLVL)
+     PLATFORM_DISPI(COMPILER_CXX_LANGLVL);
+   #else
+     printf("WARNING: Missing PLATFORM_COMPILER_C(XX)_LANGLVL!");
+   #endif
+   PLATFORM_DISP(OS_FAMILYNAME);
++  #ifdef PLATFORM_OS_SUBFAMILYNAME
++  { const char * OS_SUBFAMILYNAME = PLATFORM_STRINGIFY(PLATFORM_OS_SUBFAMILYNAME);
++    PLATFORM_DISP(OS_SUBFAMILYNAME);
++  }
++  #endif
+   PLATFORM_DISP(ARCH_FAMILYNAME);
+-  #if PLATFORM_ARCH_32
++  #ifdef PLATFORM_ARCH_32
+     PLATFORM_DISPI(ARCH_32);
+     assert(sizeof(void *) == 4);
+   #else
+@@ -1146,7 +1170,7 @@ int main(void) {
+   #endif
+   { int x = 0x00FF;
+     unsigned char *p = (unsigned char *)&x;
+-  #if PLATFORM_ARCH_BIG_ENDIAN
++  #ifdef PLATFORM_ARCH_BIG_ENDIAN
+     PLATFORM_DISPI(ARCH_BIG_ENDIAN);
+     assert(*p == 0);
+   #else