{bio}[foss/2023b] Mustache v1.3.3, hic-straw v1.3.1, cooler v0.10.2, multiprocess v0.70.16

easybuild/easyconfigs/c/cooler/cooler-0.10.2-foss-2023b.eb

@@ -0,0 +1,46 @@
+easyblock = 'PythonBundle'
+
+name = 'cooler'
+version = '0.10.2'
+
+homepage = 'https://open2c.github.io/cooler'
+description = """Cooler is a support library for a storage format, also called cooler, used to store
+ genomic interaction data of any size, such as Hi-C contact matrices."""
+
+toolchain = {'name': 'foss', 'version': '2023b'}
+
+builddependencies = [
+    ('hatchling', '1.18.0'),
+]
+
+dependencies = [
+    ('Python', '3.11.5'),
+    ('Python-bundle-PyPI', '2023.10'),
+    ('SciPy-bundle', '2023.11'),
+    ('h5py', '3.11.0'),
+    ('PyYAML', '6.0.1'),
+    ('pyfaidx', '0.8.1.1'),
+    ('dill', '0.3.8'),
+    ('multiprocess', '0.70.16'),
+]
+
+use_pip = True
+
+exts_list = [
+    ('asciitree', '0.3.3', {
+        'checksums': ['4aa4b9b649f85e3fcb343363d97564aa1fb62e249677f2e18a96765145cc0f6e'],
+    }),
+    ('toolz', '1.0.0', {
+        'checksums': ['2c86e3d9a04798ac556793bced838816296a2f085017664e4995cb40a1047a02'],
+    }),
+    ('cytoolz', '1.0.0', {
+        'checksums': ['eb453b30182152f9917a5189b7d99046b6ce90cdf8aeb0feff4b2683e600defd'],
+    }),
+    (name, version, {
+        'checksums': ['3780a2e69b2ec89882dfc2775de5d9b54ccb79569dc5f042b4851599388112dc'],
+    }),
+]
+
+sanity_pip_check = True
+
+moduleclass = 'bio'

easybuild/easyconfigs/h/hic-straw/hic-straw-1.3.1-foss-2023b.eb

@@ -0,0 +1,29 @@
+easyblock = 'PythonPackage'
+
+name = 'hic-straw'
+version = '1.3.1'
+
+homepage = 'https://github.com/aidenlab/straw'
+description = "Straw is a library which allows rapid streaming of contact data from .hic files."
+
+toolchain = {'name': 'foss', 'version': '2023b'}
+
+sources = [SOURCE_TAR_GZ]
+checksums = ['fb0f878127f6b1d096303c67793477c83fddf3f4a1a8e29a9d92952634989876']
+
+builddependencies = [('pybind11', '2.11.1')]
+
+dependencies = [
+    ('Python', '3.11.5'),
+    ('Python-bundle-PyPI', '2023.10'),
+    ('SciPy-bundle', '2023.11'),
+    ('cURL', '8.3.0'),
+]
+
+use_pip = True
+sanity_pip_check = True
+download_dep_fail = True
+
+options = {'modulename': 'hicstraw'}
+
+moduleclass = 'bio'

easybuild/easyconfigs/m/Mustache/Mustache-1.3.3-foss-2023b.eb

@@ -0,0 +1,39 @@
+easyblock = 'PythonPackage'
+
+name = 'Mustache'
+version = '1.3.3'
+
+homepage = 'https://github.com/ay-lab/mustache'
+description = """Mustache (Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using
+Scale-Space Representation) is a tool for multi-scale detection of chromatin loops from Hi-C and Micro-C
+contact maps in high resolutions (10kbp all the way to 500bp and even more).
+Mustache uses recent technical advances in scale-space theory in
+Computer Vision to detect chromatin loops caused by interaction of DNA segments with a variable size."""
+
+toolchain = {'name': 'foss', 'version': '2023b'}
+
+source_urls = ['https://pypi.python.org/packages/source/m/mustache_hic']
+sources = [{'download_filename': 'mustache_hic-%(version)s.tar.gz', 'filename': SOURCE_TAR_GZ}]
+checksums = ['fd7cca927e36145bf6e43903a79c3222ecfeeb497c8f57657d7647ec6eee5a6b']
+
+dependencies = [
+    ('Python', '3.11.5'),
+    ('Python-bundle-PyPI', '2023.10'),
+    ('SciPy-bundle', '2023.11'),
+    ('h5py', '3.11.0'),
+    ('HDF5', '1.14.3'),
+    ('cooler', '0.10.2'),
+    ('statsmodels', '0.14.1'),
+    ('hic-straw', '1.3.1'),
+]
+
+# delete pathlib dependency from setup.py
+preinstallopts = "sed -i 's/pathlib//' setup.py && "
+
+sanity_pip_check = True
+use_pip = True
+download_dep_fail = True
+
+options = {'modulename': 'mustache'}
+
+moduleclass = 'ai'

easybuild/easyconfigs/m/multiprocess/multiprocess-0.70.16-gfbf-2023b.eb

@@ -0,0 +1,24 @@
+easyblock = 'PythonPackage'
+
+name = 'multiprocess'
+version = '0.70.16'
+
+homepage = 'https://github.com/uqfoundation/multiprocess'
+description = "better multiprocessing and multithreading in python"
+
+toolchain = {'name': 'gfbf', 'version': '2023b'}
+
+sources = [SOURCE_TAR_GZ]
+checksums = ['161af703d4652a0e1410be6abccecde4a7ddffd19341be0a7011b94aeb171ac1']
+
+dependencies = [
+    ('Python', '3.11.5'),
+    ('dill', '0.3.8'),
+    ('Arrow', '16.1.0'),
+]
+
+download_dep_fail = True
+use_pip = True
+sanity_pip_check = True
+
+moduleclass = 'lib'