{tools}[gfbf/2023b] Spyder v6.0.1, Deprecated v1.2.14, PyQt-builder v1.16.4, ... by pavelToman · Pull Request #21684 · easybuilders/easybuild-easyconfigs

pavelToman · 2024-10-17T11:59:34Z

(created using eb --new-pr)
resolves vscentrum/vsc-software-stack#431
requierd:

Fix conflict for platformdirs dependency in Pylint-3.2.5-GCCcore-13.2.0 #21873

…f-2023b.eb, PyQt-builder-1.16.4-GCCcore-13.2.0.eb, PyQt5-5.15.10-GCCcore-13.2.0.eb, Qtconsole-5.6.0-GCCcore-13.2.0.eb, QtPy-2.4.1-GCCcore-13.2.0.eb, Rtree-1.2.0-GCCcore-13.2.0.eb, wrapt-1.16.0-gfbf-2023b.eb

pavelToman · 2024-10-17T12:01:17Z

@boegelbot please test @ generoso

boegelbot · 2024-10-17T12:05:09Z

@pavelToman: Request for testing this PR well received on login1

PR test command 'EB_PR=21684 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_21684 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 14506

Test results coming soon (I hope)...

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boegelbot · 2024-10-17T12:52:58Z

Test report by @boegelbot
SUCCESS
Build succeeded for 8 out of 8 (8 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/d999934e9965fe8abf08537b1a7a3a41 for a full test report.

pavelToman · 2024-10-17T13:43:33Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-10-17T13:50:13Z

@pavelToman: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=21684 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_21684 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 5111

Test results coming soon (I hope)...

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boegelbot · 2024-10-17T14:20:52Z

Test report by @boegelbot
SUCCESS
Build succeeded for 8 out of 8 (8 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/f279a1aa48c7e41fc6e9935066f69b86 for a full test report.

Flamefire · 2024-10-18T07:10:39Z

Would it make sense to use the same dependencies as in #21653 (and dependent PRs) such that the extracted easyconfigs can be used in other places? That would also bring down the number of extensions installed in the Spyder EC and updating the ECs might be sufficiently easy, at least after merging #21653

I'd also double check the extension list of Spyder with findPythonDeps using the fixed version from easybuilders/easybuild-framework#4682

I could help with that if desired.

pavelToman · 2024-10-21T12:20:42Z

@boegelbot please test @ generoso

easybuild/easyconfigs/t/text-unidecode/text-unidecode-1.3-GCCcore-13.2.0.eb

boegelbot · 2024-10-21T12:25:10Z

@pavelToman: Request for testing this PR well received on login1

PR test command 'EB_PR=21684 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_21684 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 14548

Test results coming soon (I hope)...

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boegelbot · 2024-10-21T13:18:50Z

Test report by @boegelbot
SUCCESS
Build succeeded for 15 out of 15 (15 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/36047f4dd20dd73d097c8b11aa80360c for a full test report.

pavelToman · 2024-10-21T16:18:46Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-10-21T16:20:09Z

@pavelToman: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=21684 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_21684 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 5142

Test results coming soon (I hope)...

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boegelbot · 2024-10-21T16:53:13Z

Test report by @boegelbot
SUCCESS
Build succeeded for 15 out of 15 (15 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/1661b1081727094f6cc80a740154d522 for a full test report.

pavelToman · 2024-10-22T09:44:29Z

@boegelbot please test @ generoso

boegelbot · 2024-10-22T09:45:11Z

@pavelToman: Request for testing this PR well received on login1

PR test command 'EB_PR=21684 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_21684 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 14551

Test results coming soon (I hope)...

Details

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Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-10-22T10:38:48Z

Test report by @boegelbot
SUCCESS
Build succeeded for 15 out of 15 (15 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/2e4ec6de9a6b10fe8b65217710bc4e08 for a full test report.

pavelToman · 2024-10-22T12:37:36Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-10-22T12:40:10Z

@pavelToman: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=21684 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_21684 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 5146

Test results coming soon (I hope)...

Details

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Message to humans: this is just bookkeeping information for me,
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boegelbot · 2024-10-22T13:10:51Z

Test report by @boegelbot
SUCCESS
Build succeeded for 15 out of 15 (15 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/bb407e253c88221a2be1d8e2603df9c8 for a full test report.

Flamefire

I verified the packages against existing EasyConfigs and the findPythonDeps output. Comments and suggestions inline, tested locally.

Mostly: Lower to GCCcore and use PythonPackage where possible. Not really critical but I think it makes usage and updating later easier

easybuild/easyconfigs/p/python-slugify/python-slugify-8.0.4-GCCcore-13.2.0.eb

easybuild/easyconfigs/w/wrapt/wrapt-1.16.0-gfbf-2023b.eb

easybuild/easyconfigs/s/Spyder/Spyder-6.0.1-gfbf-2023b.eb

Co-authored-by: Alexander Grund <Flamefire@users.noreply.github.com>

pavelToman · 2024-11-19T10:24:15Z

Thank you @Flamefire for a review and commit suggestions!

pavelToman · 2024-11-19T10:24:24Z

@boegelbot please test @ generoso

boegelbot · 2024-11-19T10:25:10Z

@pavelToman: Request for testing this PR well received on login1

PR test command 'EB_PR=21684 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_21684 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 14739

Test results coming soon (I hope)...

Details

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Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-11-19T11:16:15Z

Test report by @boegelbot
FAILED
Build succeeded for 14 out of 15 (15 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/e2f23c862938c58903f055883a122422 for a full test report.

…asyconfigs into 20241017135930_new_pr_Spyder601

… sanity check for Spyder v6.0.1

Flamefire · 2024-12-11T07:33:32Z

easybuild/easyconfigs/s/Spyder/Spyder-6.0.1-GCCcore-13.2.0.eb


-enhance_sanity_check = True
-sanity_check_paths = {'files': ['bin/spyder']}
+sanity_check_paths = {


@boegel I suggested to use this approach of not repeating default checks when using enhance_sanity_check as to me it is a bug that the original dirs is not checked which will be fixed by easybuilders/easybuild-easyblocks#3477

As not having the path will still result in a sanity check failure (import and/or spyder --help) I'd rather not introduce something we have to cleanup later.

What do you think?

Fixing the bug is definitely a better approach, I'll take a look at easybuilders/easybuild-easyblocks#3477 ...

easybuilders/easybuild-easyblocks#3477 will need a bit of testing, I won't let that block this PR, we'll need to clean up a bunch of other easyconfigs anyway to use enhance_sanity_check once that easyblock PR is merged...

…asyconfigs into 20241017135930_new_pr_Spyder601

easybuild/easyconfigs/d/Deprecated/Deprecated-1.2.14-GCCcore-13.2.0.eb

…3.2.0.eb Co-authored-by: Alexander Grund <Flamefire@users.noreply.github.com>

boegel · 2025-01-14T15:38:54Z

Test report by @boegel
SUCCESS
Build succeeded for 15 out of 15 (15 easyconfigs in total)
node3101.skitty.os - Linux RHEL 9.4, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz (skylake_avx512), Python 3.9.18
See https://gist.github.com/boegel/245a9ee6ca61642ab85e65393f10d38b for a full test report.

boegel

lgtm

boegel · 2025-01-14T15:48:11Z

Going in, thanks @pavelToman!

adding easyconfigs: Spyder-6.0.1-gfbf-2023b.eb, Deprecated-1.2.14-gfb…

11bc9c0

…f-2023b.eb, PyQt-builder-1.16.4-GCCcore-13.2.0.eb, PyQt5-5.15.10-GCCcore-13.2.0.eb, Qtconsole-5.6.0-GCCcore-13.2.0.eb, QtPy-2.4.1-GCCcore-13.2.0.eb, Rtree-1.2.0-GCCcore-13.2.0.eb, wrapt-1.16.0-gfbf-2023b.eb

pavelToman mentioned this pull request Oct 17, 2024

Spyder vscentrum/vsc-software-stack#431

Closed

6 tasks

pavelToman changed the title ~~{tools,vis}[GCCcore/13.2.0] Spyder v6.0.1, Deprecated v1.2.14, PyQt-builder v1.16.4, ...~~ {tools}[gfbf/2023b] Spyder v6.0.1, Deprecated v1.2.14, PyQt-builder v1.16.4, ... Oct 17, 2024

add ecs for deps and remove them from exts_list

10cf300

Flamefire reviewed Oct 21, 2024

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easybuild/easyconfigs/t/text-unidecode/text-unidecode-1.3-GCCcore-13.2.0.eb Outdated Show resolved Hide resolved

update text-unicode EC to PythonPackage

2b74dfa

pavelToman mentioned this pull request Nov 13, 2024

{lib}[foss/2023b] synthcity v0.2.11, pycodestyle v2.11.1, python-igraph v0.11.8, ... w/ PyTorch 2.1.2, llvmlite, ... #21845

Merged

boegel added new update labels Nov 16, 2024

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pavelToman and others added 4 commits November 19, 2024 11:22

Update easybuild/easyconfigs/s/Spyder/Spyder-6.0.1-gfbf-2023b.eb

b3e3a5a

Co-authored-by: Alexander Grund <Flamefire@users.noreply.github.com>

Update easybuild/easyconfigs/s/Spyder/Spyder-6.0.1-gfbf-2023b.eb

67f9539

Co-authored-by: Alexander Grund <Flamefire@users.noreply.github.com>

Update easybuild/easyconfigs/s/Spyder/Spyder-6.0.1-gfbf-2023b.eb

f28a80c

Co-authored-by: Alexander Grund <Flamefire@users.noreply.github.com>

Update easybuild/easyconfigs/s/Spyder/Spyder-6.0.1-gfbf-2023b.eb

10ab09c

Co-authored-by: Alexander Grund <Flamefire@users.noreply.github.com>

pavelToman mentioned this pull request Nov 29, 2024

{vis}[GCCcore/13.2.0,foss/2023b,gfbf/2023b] MONAI v1.4.0, PyAMG v5.2.1, zarr v2.18.3, ... #21937

Merged

pavelToman removed the new label Dec 4, 2024

Merge branch 'develop' of https://github.com/easybuilders/easybuild-e…

1a0a8e2

…asyconfigs into 20241017135930_new_pr_Spyder601

github-actions bot added the new label Dec 10, 2024

pavelToman removed the new label Dec 10, 2024

fix name of easyconfigs that are using GCCcore/13.2.0 toolchain + fix…

0250642

… sanity check for Spyder v6.0.1

boegel force-pushed the 20241017135930_new_pr_Spyder601 branch from 1ebbde7 to 0250642 Compare December 11, 2024 07:08

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Merge branch 'develop' of https://github.com/easybuilders/easybuild-e…

b73fa6a

…asyconfigs into 20241017135930_new_pr_Spyder601

Flamefire reviewed Dec 12, 2024

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easybuild/easyconfigs/d/Deprecated/Deprecated-1.2.14-GCCcore-13.2.0.eb Outdated Show resolved Hide resolved

Update easybuild/easyconfigs/d/Deprecated/Deprecated-1.2.14-GCCcore-1…

d646c40

…3.2.0.eb Co-authored-by: Alexander Grund <Flamefire@users.noreply.github.com>

zdemat mentioned this pull request Jan 7, 2025

{vis,lang}[GCCcore/13.2.0] PyQt5 v5.15.11, SIP v6.8.6, PyQt-builder v1.16.4 w/ Python/3.11.5 #21930

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boegel modified the milestones: 4.x, release after 4.9.4 Jan 14, 2025

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boegel merged commit e842030 into easybuilders:develop Jan 14, 2025

boegel modified the milestones: release after 4.9.4, 5.0.0 Mar 18, 2025

pavelToman mentioned this pull request Jul 14, 2025

{data}[gfbf/2025a] xarray v2025.7.0 #23320

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