{lib,vis}[GCCcore/13.2.0] FORD v7.0.6, graphviz-python v0.20.1

easybuild/easyconfigs/f/FORD/FORD-7.0.6-GCCcore-13.2.0.eb

@@ -0,0 +1,59 @@
+easyblock = 'PythonBundle'
+
+name = 'FORD'
+version = '7.0.6'
+
+homepage = 'https://github.com/Fortran-FOSS-Programmers/ford/wiki'
+description = 'FORD is an automatic documentation generator for modern Fortran programs'
+
+toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
+
+builddependencies = [
+    ('binutils', '2.40'),
+    ('hatchling', '1.18.0'),
+]
+
+dependencies = [
+    ('Python', '3.11.5'),
+    ('graphviz-python', '0.20.1',),
+    ('BeautifulSoup', '4.12.2'),
+]
+
+exts_list = [
+    ('Markdown', '3.4.4', {
+        'checksums': ['225c6123522495d4119a90b3a3ba31a1e87a70369e03f14799ea9c0d7183a3d6'],
+    }),
+    ('markdown_include', '0.7.2', {
+        'source_tmpl': '%(name)s-%(version)s-py3-none-any.whl',
+        'checksums': ['09ca3a7470b79d217be828a27c6808c24f4a8814cc422fca05be1bc3fd866907'],
+    }),
+    ('python-markdown-math', '0.8', {
+        'modulename': 'mdx_math',
+        'checksums': ['8564212af679fc18d53f38681f16080fcd3d186073f23825c7ce86fadd3e3635'],
+    }),
+    ('md-environ', '0.1.0', {
+        'checksums': ['fe3c2a255af523d6f522831c699336cd71f9d543714067d93206ed35836f1793'],
+    }),
+    ('toposort', '1.7', {
+        'checksums': ['ddc2182c42912a440511bd7ff5d3e6a1cabc3accbc674a3258c8c41cbfbb2125'],
+    }),
+    ('pygments', '2.18.0', {
+        'checksums': ['786ff802f32e91311bff3889f6e9a86e81505fe99f2735bb6d60ae0c5004f199'],
+    }),
+    ('tqdm', '4.64.1', {
+        'checksums': ['5f4f682a004951c1b450bc753c710e9280c5746ce6ffedee253ddbcbf54cf1e4'],
+    }),
+    ('pcpp', '1.30', {
+        'checksums': ['5af9fbce55f136d7931ae915fae03c34030a3b36c496e72d9636cedc8e2543a1'],
+    }),
+    (name, version, {
+        'checksums': ['662d0cab60234743ed7b863fbb980e0af909f31e0205011d7978ea2dedc3e952'],
+    }),
+]
+
+sanity_check_paths = {
+    'files': ['bin/ford'],
+    'dirs': ['bin', 'lib'],
+}
+
+moduleclass = 'lib'

easybuild/easyconfigs/g/GTS/GTS-0.7.6-GCCcore-13.2.0.eb

@@ -0,0 +1,30 @@
+easyblock = 'ConfigureMake'
+
+name = 'GTS'
+version = '0.7.6'
+
+homepage = 'http://gts.sourceforge.net/'
+description = """GTS stands for the GNU Triangulated Surface Library.
+It is an Open Source Free Software Library intended to provide a set of useful
+functions to deal with 3D surfaces meshed with interconnected triangles."""
+
+toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
+
+source_urls = [SOURCEFORGE_SOURCE]
+sources = [SOURCELOWER_TAR_GZ]
+checksums = ['059c3e13e3e3b796d775ec9f96abdce8f2b3b5144df8514eda0cc12e13e8b81e']
+
+builddependencies = [
+    ('pkgconf', '2.0.3'),
+    ('binutils', '2.40'),
+]
+dependencies = [
+    ('GLib', '2.78.1'),
+]
+
+sanity_check_paths = {
+    'files': ['lib/libgts.%s' % SHLIB_EXT, 'bin/gts2oogl', 'bin/gtscheck'],
+    'dirs': [],
+}
+
+moduleclass = 'vis'

easybuild/easyconfigs/g/Graphviz/Graphviz-9.0.0-GCCcore-13.2.0.eb

@@ -0,0 +1,94 @@
+easyblock = 'ConfigureMake'
+
+name = 'Graphviz'
+version = '9.0.0'
+local_pyver_major = '3'
+
+homepage = 'https://www.graphviz.org/'
+description = """Graphviz is open source graph visualization software. Graph visualization
+ is a way of representing structural information as diagrams of
+ abstract graphs and networks. It has important applications in networking,
+ bioinformatics,  software engineering, database and web design, machine learning,
+ and in visual interfaces for other technical domains."""
+
+toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
+
+source_urls = ['https://gitlab.com/graphviz/graphviz/-/archive/%(version)s']
+sources = [SOURCELOWER_TAR_GZ]
+patches = ['%(name)s-%(version)s_skip-install-data-hook.patch']
+checksums = [
+    {'graphviz-9.0.0.tar.gz': '504d19b5d0e5398a57e9d9de42393f90b9e79aff0969b4ebc3b891ccb39602ed'},
+    {'Graphviz-9.0.0_skip-install-data-hook.patch': '148bcae14aa053cab9448c5c151876ec995a9b71f76366db742b6f0f8b7fc22a'},
+]
+
+builddependencies = [
+    ('Autotools', '20220317'),
+    ('binutils', '2.40'),
+    ('Bison', '3.8.2'),
+    ('flex', '2.6.4'),
+    ('SWIG', '4.1.1'),
+    ('pkgconf', '2.0.3'),
+]
+
+dependencies = [
+    ('Java', '11', '', SYSTEM),
+    ('Python', '3.11.5'),
+    ('FriBidi', '1.0.13'),
+    ('Gdk-Pixbuf', '2.42.10'),
+    ('Ghostscript', '10.02.1'),
+    ('GTS', '0.7.6'),
+    ('libgd', '2.3.3'),
+    ('Pango', '1.51.0'),
+    ('Perl', '5.38.0'),
+    ('Qt6', '6.6.3'),
+    ('Tcl', '8.6.13'),
+    ('zlib', '1.2.13'),
+    ('bzip2', '1.0.8'),
+    ('libjpeg-turbo', '3.0.1'),
+    ('expat', '2.5.0'),
+]
+
+preconfigopts = './autogen.sh NOCONFIG && '
+
+configopts = '--enable-python%s=yes ' % local_pyver_major
+configopts += '--enable-guile=no --enable-lua=no --enable-ocaml=no '
+configopts += '--enable-r=no --enable-ruby=no --enable-php=no '
+# Use ltdl from libtool in EB
+configopts += '--enable-ltdl --without-included-ltdl --disable-ltdl-install '
+configopts += '--with-ltdl-include=$EBROOTLIBTOOL/include --with-ltdl-lib=$EBROOTLIBTOOL/lib '
+# Override the hardcoded paths to Java libraries
+configopts += '--with-javaincludedir=$JAVA_HOME/include --with-javaincludedir=$JAVA_HOME/include/linux '
+configopts += '--with-javalibdir=$JAVA_HOME/lib'
+configopts += '--with-expatincludedir=$EBROOTEXPAT/include --with-expatlibdir=$EBROOTEXPAT/lib'
+configopts += '--with-zincludedir=$EBROOTZLIB/include --with-zlibdir=$EBROOTZLIB/lib'
+
+prebuildopts = 'qmake -o cmd/gvedit/qMakefile cmd/gvedit/gvedit.pro && '
+
+postinstallcmds = ['%(installdir)s/bin/dot -c']  # Writes plugin configuration
+
+sanity_check_paths = {
+    'files': ['bin/%s' % x for x in ['acyclic', 'bcomps', 'ccomps', 'cluster', 'diffimg', 'dijkstra', 'dot',
+                                     'dot_builtins', 'edgepaint', 'gc', 'gml2gv', 'graphml2gv', 'gv2gml',
+                                     'gvcolor', 'gvedit', 'gvgen', 'gvmap', 'gvmap.sh', 'gvpack', 'gvpr', 'gxl2gv',
+                                     'neato', 'mm2gv', 'nop', 'prune', 'sccmap', 'tred', 'unflatten',
+                                     'vimdot']] +
+             ['lib/%s.%s' % (x, SHLIB_EXT) for x in ['libcdt', 'libcgraph', 'libgvc', 'libgvpr', 'liblab_gamut',
+                                                     'libpathplan', 'libxdot']],
+    'dirs': ['include', 'lib/graphviz', 'lib/graphviz/java', 'lib/graphviz/python%s' % local_pyver_major,
+             'lib/pkgconfig', 'share']
+}
+
+sanity_check_commands = [
+    ("test ! -d $EBROOTTCL/lib/*/graphviz", ''),
+    ("test ! -d $EBROOTTCL/lib64/*/graphviz", ''),
+    ('python', '-c "import gv"'),
+]
+
+modextrapaths = {
+    'CLASSPATH': 'lib/graphviz/java',
+    'LD_LIBRARY_PATH': 'lib/graphviz/java',
+    'PYTHONPATH': 'lib/graphviz/python%s' % local_pyver_major,
+    'TCLLIBPATH': 'lib/graphviz/tcl',
+}
+
+moduleclass = 'vis'

easybuild/easyconfigs/g/Graphviz/Graphviz-9.0.0_skip-install-data-hook.patch

@@ -0,0 +1,83 @@
+diff -Nru graphviz-9.0.0-orig/tclpkg/Makefile.am graphviz-9.0.0/tclpkg/Makefile.am
+--- graphviz-9.0.0-orig/tclpkg/Makefile.am	2023-09-11 20:27:30.000000000 +0200
++++ graphviz-9.0.0/tclpkg/Makefile.am	2024-05-31 18:26:29.103828602 +0200
+@@ -32,78 +32,7 @@
+ #    ./configure --prefix=$HOME/graphviz; make; make install
+ # without root privileges.
+ install-data-hook:
+-if WITH_LUA
+-	-mkdir -p $(DESTDIR)$(LUA_INSTALL_DIR);
+-	if test -w $(DESTDIR)$(LUA_INSTALL_DIR); then \
+-		(cd $(DESTDIR)$(LUA_INSTALL_DIR); \
+-			cp -f $(DESTDIR)$(pkgluadir)/libgv_lua.so gv.so;) \
+-	else \
+-		echo "Warning: $(LUA_INSTALL_DIR) is not writable."; \
+-		echo "Skipping system installation of lua binding."; \
+-	fi
+-endif
+-if WITH_PERL
+-	-mkdir -p $(DESTDIR)$(PERL_INSTALL_DIR);
+-	if test -w $(DESTDIR)$(PERL_INSTALL_DIR); then \
+-		(cd $(DESTDIR)$(PERL_INSTALL_DIR); \
+-			cp -f $(DESTDIR)$(pkgperldir)/libgv_perl.so gv.so; \
+-			cp -f $(DESTDIR)$(pkgperldir)/gv.pm gv.pm;) \
+-	else \
+-		echo "Warning: $(PERL_INSTALL_DIR) is not writable."; \
+-		echo "Skipping system installation of perl binding."; \
+-	fi
+-endif
+-if WITH_PHP
+-	-mkdir -p $(DESTDIR)$(PHP_INSTALL_DIR);
+-	if test -w $(DESTDIR)$(PHP_INSTALL_DIR); then \
+-		(cd $(DESTDIR)$(PHP_INSTALL_DIR); \
+-			cp -f $(DESTDIR)$(pkgphpdir)/libgv_php.so gv.so;) \
+-	else \
+-		echo "Warning: $(PHP_INSTALL_DIR) is not writable."; \
+-		echo "Skipping system installation of php binding."; \
+-	fi
+-if WITH_SWIG_PHP_DATA
+-	-mkdir -p $(DESTDIR)$(PHP_INSTALL_DATADIR);
+-	if test -w $(DESTDIR)$(PHP_INSTALL_DATADIR); then \
+-		(cd $(DESTDIR)$(PHP_INSTALL_DATADIR); \
+-			cp -f $(DESTDIR)$(pkgphpdir)/gv.php gv.php;) \
+-	else \
+-		echo "Warning: $(PHP_INSTALL_DATADIR) is not writable."; \
+-		echo "Skipping system installation of php binding."; \
+-	fi
+-endif
+-endif
+-if WITH_PYTHON3
+-	-mkdir -p $(DESTDIR)$(PYTHON3_INSTALL_DIR);
+-	if test -w $(DESTDIR)$(PYTHON3_INSTALL_DIR); then \
+-		(cd $(DESTDIR)$(PYTHON3_INSTALL_DIR); \
+-			cp -f $(DESTDIR)$(pkgpython3dir)/libgv_python3.so _gv.so; \
+-			cp -f $(DESTDIR)$(pkgpython3dir)/gv.py gv.py;) \
+-	else \
+-		echo "Warning: $(PYTHON3_INSTALL_DIR) is not writable."; \
+-		echo "Skipping system installation of python3 binding."; \
+-	fi
+-endif
+-if WITH_RUBY
+-	-mkdir -p $(DESTDIR)$(RUBY_INSTALL_DIR);
+-	if test -w $(DESTDIR)$(RUBY_INSTALL_DIR); then \
+-		(cd $(DESTDIR)$(RUBY_INSTALL_DIR); \
+-			cp -f $(DESTDIR)$(pkgrubydir)/libgv_ruby.so gv.so;) \
+-	else \
+-		echo "Warning: $(RUBY_INSTALL_DIR) is not writable."; \
+-		echo "Skipping system installation of ruby binding."; \
+-	fi
+-endif
+-if WITH_TCL
+-	-mkdir -p $(DESTDIR)$(TCL_INSTALL_DIR);
+-	if test -w $(DESTDIR)$(TCL_INSTALL_DIR)/; then \
+-		(cd $(DESTDIR)$(TCL_INSTALL_DIR); \
+-			cp -rf $(DESTDIR)$(pkgtcldir) $(PACKAGE_NAME);) \
+-	else \
+-		echo "Warning: $(TCL_INSTALL_DIR) is not writable."; \
+-		echo "Skipping system installation of tcl bindings."; \
+-	fi
+-endif
++	echo "(installing in non-owned directories has been patched out)"
+ endif
+
+ # removal of installs into $(xxx_INSTALL_DIR) fail if root

easybuild/easyconfigs/g/graphviz-python/graphviz-python-0.20.1-GCCcore-13.2.0.eb

@@ -0,0 +1,26 @@
+easyblock = 'PythonPackage'
+
+name = 'graphviz-python'
+version = '0.20.1'
+
+homepage = 'https://pypi.python.org/pypi/graphviz'
+description = """Simple Python interface for Graphviz"""
+
+toolchain = {'name': 'GCCcore', 'version': '13.2.0'}
+
+source_urls = ['https://pypi.python.org/packages/source/g/graphviz']
+sources = ['graphviz-%(version)s.zip']
+checksums = ['8c58f14adaa3b947daf26c19bc1e98c4e0702cdc31cf99153e6f06904d492bf8']
+
+builddependencies = [
+    ('binutils', '2.40'),
+]
+
+dependencies = [
+    ('Python', '3.11.5'),
+    ('Graphviz', '9.0.0'),
+]
+
+options = {'modulename': 'graphviz'}
+
+moduleclass = 'vis'