{vis}[foss/2023a] micro-sam v1.0.1, torch_em v0.7.1, affogato v0.3.3, ... by pavelToman · Pull Request #20636 · easybuilders/easybuild-easyconfigs

pavelToman · 2024-05-24T13:26:32Z

(created using eb --new-pr)

…s-2023a.eb, affogato-0.3.3-foss-2023a.eb, segment-anything-1.0-foss-2023a.eb, z5py-2.0.17-foss-2023a.eb, python-elf-0.5.1-foss-2023a.eb, nifty-1.2.1-foss-2023a.eb, vigra-1.11.2-foss-2023a.eb

pavelToman · 2024-05-24T13:26:56Z

@boegelbot please test @ generoso

boegelbot · 2024-05-24T13:30:08Z

@pavelToman: Request for testing this PR well received on login1

PR test command 'EB_PR=20636 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_20636 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 13555

Test results coming soon (I hope)...

Details

- notification for comment with ID 2129537477 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

pavelToman · 2024-06-05T15:19:07Z

@boegelbot please test @ generoso

boegelbot · 2024-06-05T15:20:09Z

@pavelToman: Request for testing this PR well received on login1

PR test command 'EB_PR=20636 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_20636 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 13643

Test results coming soon (I hope)...

Details

- notification for comment with ID 2150338473 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-06-05T16:08:56Z

Test report by @boegelbot
SUCCESS
Build succeeded for 12 out of 12 (12 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/140b5e0de3928a2c7098bf32a6883d9d for a full test report.

pavelToman · 2024-06-06T09:21:13Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-06-06T09:30:09Z

@pavelToman: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=20636 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_20636 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 4299

Test results coming soon (I hope)...

Details

- notification for comment with ID 2151812349 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-06-06T09:54:24Z

Test report by @boegelbot
SUCCESS
Build succeeded for 12 out of 12 (12 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/9098936f4539a47159f5711c2e87d2fd for a full test report.

pavelToman · 2024-06-14T09:09:07Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-06-14T09:10:09Z

@pavelToman: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=20636 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_20636 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 4379

Test results coming soon (I hope)...

Details

- notification for comment with ID 2167595207 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-06-14T09:34:14Z

Test report by @boegelbot
SUCCESS
Build succeeded for 12 out of 12 (12 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/bbac851653419be6fc1bb545d8a7f84e for a full test report.

pavelToman · 2024-06-17T08:09:49Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-06-17T08:10:44Z

@pavelToman: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=20636 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_20636 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 4398

Test results coming soon (I hope)...

Details

- notification for comment with ID 2172585484 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-06-17T08:34:36Z

Test report by @boegelbot
SUCCESS
Build succeeded for 12 out of 12 (12 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/5a2a260ced4b3b6c3fa594edbabc96fc for a full test report.

…ch are not required since hatchling is available as build dependency

easybuild/easyconfigs/t/torch_em/torch_em-0.7.1-foss-2023a.eb

easybuild/easyconfigs/n/nifty/nifty-1.2.1-foss-2023a.eb

easybuild/easyconfigs/z/z5py/z5py-2.0.17-foss-2023a.eb

easybuild/easyconfigs/t/torch_em/torch_em-0.7.1-foss-2023a.eb

boegel · 2024-06-18T20:51:16Z

@boegelbot please test @ generoso

boegelbot · 2024-06-18T20:55:11Z

@boegel: Request for testing this PR well received on login1

PR test command 'EB_PR=20636 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_20636 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 13772

Test results coming soon (I hope)...

Details

- notification for comment with ID 2176950339 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegel · 2024-06-18T21:02:28Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-06-18T21:10:12Z

@boegel: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=20636 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_20636 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 4417

Test results coming soon (I hope)...

Details

- notification for comment with ID 2176967257 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-06-18T21:37:58Z

Test report by @boegelbot
SUCCESS
Build succeeded for 12 out of 12 (12 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/d6943f79e9f5548bf218c92317cd5567 for a full test report.

boegelbot · 2024-06-18T21:43:06Z

Test report by @boegelbot
SUCCESS
Build succeeded for 12 out of 12 (12 easyconfigs in total)
cns2 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/2a0c5681a847d5ce796e209df444814e for a full test report.

boegel · 2024-06-19T07:06:15Z

Test report by @boegel
SUCCESS
Build succeeded for 12 out of 12 (12 easyconfigs in total)
node3107.skitty.os - Linux RHEL 8.8, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, Python 3.6.8
See https://gist.github.com/boegel/61ff9c6881baf2f48224d152e4823166 for a full test report.

boegel · 2024-06-19T09:57:55Z

Going in, thanks @pavelToman!

adding easyconfigs: micro-sam-1.0.1-foss-2023a.eb, torch_em-0.7.1-fos…

121683f

…s-2023a.eb, affogato-0.3.3-foss-2023a.eb, segment-anything-1.0-foss-2023a.eb, z5py-2.0.17-foss-2023a.eb, python-elf-0.5.1-foss-2023a.eb, nifty-1.2.1-foss-2023a.eb, vigra-1.11.2-foss-2023a.eb

pavelToman mentioned this pull request May 24, 2024

napari_microsam vscentrum/vsc-software-stack#314

Closed

2 tasks

pavelToman mentioned this pull request May 24, 2024

Install from source on HPC computational-cell-analytics/micro-sam#601

Closed

pavelToman and others added 4 commits May 24, 2024 15:34

fix vigra to pass tests

7bb21b0

Update nifty-1.2.1-foss-2023a.eb - fix comma

a3d6aac

add ec for deps

0442b4e

Update Boost.Python-1.83.0-GCC-12.3.0.eb fix end line

7d37a7d

This was referenced Jun 3, 2024

{bio}[foss/2023a] Single-cell-python-bundle v2024.02 #20116

Merged

{vis}[foss/2023a] empanada-napari v1.1.0, empanada-dl v0.1.7, connected-components-3d v3.14.1, Albumentations v1.4.0 #20454

Merged

update imagecodecs version

740a70d

pavelToman and others added 2 commits June 14, 2024 11:07

update boost-python version

0da7c99

Delete Boost.Python-1.83.0-GCC-12.3.0.eb

89ac618

pavelToman mentioned this pull request Jun 14, 2024

{chem}[foss/2023a] RDKit v2024.03.3 #20824

Merged

1 task

boegel added 2 commits June 18, 2024 22:22

rename torch_em to torch-em + remove preinstallopts for termcolor whi…

a100374

…ch are not required since hatchling is available as build dependency

add missing && in preinstallopts in nifty + z5py easyconfigs

d58a1fc

boegel requested changes Jun 18, 2024

View reviewed changes

rename torch_em dependency for micro-sam to torch-em

003908d

boegel approved these changes Jun 19, 2024

View reviewed changes

boegel added new update labels Jun 19, 2024

boegel added this to the 4.x milestone Jun 19, 2024

boegel merged commit 4666b2f into easybuilders:develop Jun 19, 2024

boegel modified the milestones: 4.x, release after 4.9.2 Jun 19, 2024

Conversation

pavelToman commented May 24, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

pavelToman commented May 24, 2024

Uh oh!

boegelbot commented May 24, 2024

Uh oh!

pavelToman commented Jun 5, 2024

Uh oh!

boegelbot commented Jun 5, 2024

Uh oh!

boegelbot commented Jun 5, 2024

Uh oh!

pavelToman commented Jun 6, 2024

Uh oh!

boegelbot commented Jun 6, 2024

Uh oh!

boegelbot commented Jun 6, 2024

Uh oh!

pavelToman commented Jun 14, 2024

Uh oh!

boegelbot commented Jun 14, 2024

Uh oh!

boegelbot commented Jun 14, 2024

Uh oh!

pavelToman commented Jun 17, 2024

Uh oh!

boegelbot commented Jun 17, 2024

Uh oh!

boegelbot commented Jun 17, 2024

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

boegel commented Jun 18, 2024

Uh oh!

boegelbot commented Jun 18, 2024

Uh oh!

boegel commented Jun 18, 2024

Uh oh!

boegelbot commented Jun 18, 2024

Uh oh!

boegelbot commented Jun 18, 2024

Uh oh!

boegelbot commented Jun 18, 2024

Uh oh!

boegel commented Jun 19, 2024

Uh oh!

boegel commented Jun 19, 2024

Uh oh!

Reviewers

Assignees

Labels

Projects

Milestone

Development

Uh oh!

3 participants

pavelToman commented May 24, 2024 •

edited

Loading