change arrow-R dependency of Bioconductor v3.18 to v14.0.1 (which depends on required matching Arrow v14.0.1)

[bedroge]

Bioconductor had a dependency on arrow-R 14.0.0.2, which depends on Arrow 14.0.1. However, those versions are not compatible, as the build log shows:

**** Not using: C++ library version (14.0.1) does not match R package (14.0.0.2)

It will then try to build its own version of Arrow. The script used by the build to check this has the following comment:

    # Patch releases we do for CRAN feedback get an extra x.y.z.1 version.
    # These should work with the x.y.z C++ library (which never has .1 added)

There are no CRAN source tarballs for arrow-R 14.0.1.x though (see https://cran.r-project.org/src/contrib/Archive/arrow/), so I fixed it for this version by taking the full Arrow source tarball for version 14.0.1, which contains everything (C++/R/Python sources).

I also modified Bioconductor, so that it now uses this version of arrow-R. I couldn't find any other packages that depend on arrow-R.

[bedroge]

I've also added the same comment about compatible Arrow versions to some older arrow-R easyconfigs to prevent this from happening again. I'm just not sure what to do with arrow-R-14.0.0.2-foss-2023a-R-4.3.2.eb, as it violates this and is somewhat broken (it will build its own Arrow).

[verdurin]

Test report by @verdurin
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in total)
easybuild-c7.novalocal - Linux CentOS Linux 7.9.2009, x86_64, Intel Xeon Processor (Skylake, IBRS), Python 3.6.8
See https://gist.github.com/verdurin/b844665e7a17baec2b9a1c9b826aaca9 for a full test report.

[verdurin]

@boegelbot please test @ generoso

[boegelbot]

@verdurin: Request for testing this PR well received on login1

PR test command 'EB_PR=20324 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_20324 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

• exit code: 0
• output:

Submitted batch job 13269

Test results coming soon (I hope)...

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[boegelbot]

Test report by @boegelbot
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/e4319652ed2d5dbef4e90f76f098d6ee for a full test report.

[verdurin]

@boegelbot please test @ jsc-zen3

[boegelbot]

@verdurin: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=20324 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_20324 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

• exit code: 0
• output:

Submitted batch job 3943

Test results coming soon (I hope)...

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[boegelbot]

Test report by @boegelbot
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.3, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/fcabe1163ec9e7e7112eb8a6b4bc10d5 for a full test report.

[boegel]

@boegelbot please test @ jsc-zen3

[boegelbot]

@boegel: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=20324 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_20324 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

• exit code: 0
• output:

Submitted batch job 3984

Test results coming soon (I hope)...

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[boegelbot]

Test report by @boegelbot
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.3, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/70542aba1a576fd0fe45edc4ca5e4712 for a full test report.

[boegel]

Test report by @boegel
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
node3113.skitty.os - Linux RHEL 8.8, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, Python 3.6.8
See https://gist.github.com/boegel/d5da50c58811df5c5bc99869ce509113 for a full test report.

[boegel]

lgtm