{bio}[foss/2023a] pySCENIC v0.12.1-20240311 by pavelToman · Pull Request #20080 · easybuilders/easybuild-easyconfigs

pavelToman · 2024-03-11T14:31:34Z

(created using eb --new-pr)

depends on {bio}[foss/2023a] scVelo v0.3.1, loompy v3.0.7 #20002

pavelToman · 2024-03-11T14:34:04Z

@boegelbot please test @ generoso

boegelbot · 2024-03-11T14:35:08Z

@pavelToman: Request for testing this PR well received on login1

PR test command 'EB_PR=20080 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_20080 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 13068

Test results coming soon (I hope)...

Details

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boegelbot · 2024-03-11T14:35:30Z

Test report by @boegelbot
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in total)
cns3 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/fc557b336ebef18d165e3b600380a305 for a full test report.

pavelToman · 2024-03-11T14:39:27Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-03-11T14:40:08Z

@pavelToman: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=20080 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_20080 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 3746

Test results coming soon (I hope)...

Details

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Message to humans: this is just bookkeeping information for me,
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boegelbot · 2024-03-11T14:42:06Z

Test report by @boegelbot
FAILED
Build succeeded for 1 out of 2 (1 easyconfigs in total)
jsczen3c2.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.3, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/61bf496688a87c3253da8d963e8b03a2 for a full test report.

pavelToman · 2024-03-11T15:10:49Z

@boegelbot please test @ generoso

boegelbot · 2024-03-11T15:15:08Z

@pavelToman: Request for testing this PR well received on login1

PR test command 'EB_PR=20080 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_20080 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 13070

Test results coming soon (I hope)...

Details

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Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-03-11T15:19:15Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
cns3 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/416ce3ed03354c6e14dca57b50e3cdce for a full test report.

pavelToman · 2024-03-11T16:11:42Z

Waiting for loompy from PR - #20002

pavelToman · 2024-03-11T16:11:52Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-03-11T16:20:07Z

@pavelToman: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=20080 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_20080 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 3748

Test results coming soon (I hope)...

Details

- notification for comment with ID 1988816094 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-03-11T16:22:29Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen3c2.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.3, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/7353a32647299329b0bc459a81efc532 for a full test report.

pavelToman · 2024-03-15T09:13:13Z

@boegelbot please test @ generoso

boegelbot · 2024-03-15T09:15:09Z

@pavelToman: Request for testing this PR well received on login1

PR test command 'EB_PR=20080 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_20080 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 13114

Test results coming soon (I hope)...

Details

- notification for comment with ID 1999232758 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-03-15T09:19:15Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/989fa591b4c58b3bdfd028077360fdca for a full test report.

pavelToman · 2024-03-15T09:28:22Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-03-15T09:30:08Z

@pavelToman: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=20080 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_20080 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 3781

Test results coming soon (I hope)...

Details

- notification for comment with ID 1999259402 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-03-15T09:32:49Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.3, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/dfe58442edaffd9929a7d2e7552b31b6 for a full test report.

…asyconfigs into 20240311153130_new_pr_pySCENIC0121

verdurin · 2024-03-15T15:24:45Z

Test report by @verdurin
FAILED
Build succeeded for 2 out of 3 (1 easyconfigs in total)
easybuild-c7.novalocal - Linux CentOS Linux 7.9.2009, x86_64, Intel Xeon Processor (Skylake, IBRS), Python 3.6.8
See https://gist.github.com/verdurin/0f6f8cd49532b0502ba177e33e062c93 for a full test report.

verdurin · 2024-03-15T15:42:07Z

Found 2 variants of 'dask' dependency in easyconfigs using '2023a' toolchain generation
* version: 2023.12.1; versionsuffix:  as dep for {'pySCENIC-0.12.1-20240311-foss-2023a.eb'}
  * version: 2023.9.2; versionsuffix:  as dep for {'napari-0.4.18-foss-2023a.eb', 'scikit-image-0.22.0-foss-2023a.eb', 'MONAI-1.3.0-foss-2023a.eb'}

pavelToman · 2024-03-18T19:28:24Z

@boegelbot please test @ generoso

boegelbot · 2024-03-18T19:30:05Z

@pavelToman: Request for testing this PR well received on login1

PR test command 'EB_PR=20080 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_20080 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 13130

Test results coming soon (I hope)...

Details

- notification for comment with ID 2004755177 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-03-18T19:34:05Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/3b2ded742d01a255c4372ea02a94d099 for a full test report.

pavelToman · 2024-03-19T09:49:20Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-03-19T09:50:07Z

@pavelToman: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=20080 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_20080 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 3796

Test results coming soon (I hope)...

Details

- notification for comment with ID 2006564226 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-03-19T09:52:24Z

Test report by @boegelbot
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.3, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/a6d6678c4b3f6d52f947000503a59c16 for a full test report.

boegel

lgtm

boegel · 2024-04-02T19:40:36Z

Test report by @boegel
SUCCESS
Build succeeded for 1 out of 1 (1 easyconfigs in total)
node3125.skitty.os - Linux RHEL 8.8, x86_64, Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz, Python 3.6.8
See https://gist.github.com/boegel/a832dfd3de32aef6f7d2f5c548a779f1 for a full test report.

adding easyconfigs: pySCENIC-0.12.1-foss-2023a.eb

9014005

fix filename

f0f0790

Micket added the update label Mar 11, 2024

pavelToman and others added 2 commits March 12, 2024 10:57

update version with date

8f52e90

Delete easybuild/easyconfigs/p/pySCENIC/pySCENIC-0.12.1-foss-2023a.eb

cb9d086

pavelToman changed the title ~~{bio}[foss/2023a] pySCENIC v0.12.1~~ {bio}[foss/2023a] pySCENIC v0.12.1-20240311 Mar 14, 2024

pavelToman mentioned this pull request Mar 14, 2024

{bio}[foss/2023a] Single-cell-python-bundle v2024.02 #20116

Merged

38 tasks

Merge branch 'develop' of https://github.com/easybuilders/easybuild-e…

50f466b

…asyconfigs into 20240311153130_new_pr_pySCENIC0121

Update dask version to be same as for another modules

9634384

boegel approved these changes Apr 2, 2024

View reviewed changes

boegel added this to the release after 4.9.0 milestone Apr 2, 2024

boegel merged commit 5a41af0 into easybuilders:develop Apr 2, 2024

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