{lang}[GCC/13.2.0,GCCcore/13.2.0,gfbf/2023b] SOCI v4.0.3, yaml-cpp v0.8.0, RStudio-Server v2023.12.1+402 w/ Java 11 R 4.3.3 by lazariv · Pull Request #20060 · easybuilders/easybuild-easyconfigs

lazariv · 2024-03-07T08:03:43Z

(created using eb --new-pr)

Requires {lang}[gfbf/2023b] R v4.3.3 #20047

Changes compared to RStudio-Server-2022.07.2%2B576-foss-2022a-Java-11-R-4.2.1.eb:

Patch RStudio-Server-2022.07.1+554_allow-disabling-quarto.patch not required, fixed in rstudio/rstudio@9b7ac4b
Patch RStudio-Server-2022.07.1+554_fix-libsoci-search.patch fixed with Allow to find system SOCI_* libraries rstudio/rstudio#11691
Patch RStudio-Server-2022.07.1+554_use-XDG_CACHE_HOME.patch fixed with Use XDG_CACHE_HOME for secure cookie key in low privilege mode rstudio/rstudio#11976
('nodejs', '20.9.0') required for building: https://github.com/rstudio/rstudio/blob/4da58325ffcff29d157d9264087d4b1ab27f7204/src/gwt/build.xml#L142

…13.2.0.eb, RStudio-Server-2023.12.1+402-gfbf-2023b-Java-11-R-4.3.3.eb

lazariv · 2024-03-07T08:47:57Z

Test report by @lazariv
FAILED
Build succeeded for 4 out of 5 (5 easyconfigs in total)
i8022 - Linux Rocky Linux 8.7 (Green Obsidian), x86_64, AMD EPYC 7352 24-Core Processor, 4 x NVIDIA NVIDIA A100-SXM4-40GB, 545.23.08, Python 3.8.13
See https://gist.github.com/lazariv/f5a3f5f6ed2ab1c4b20df6022bfbf33d for a full test report.

...uild/easyconfigs/r/RStudio-Server/RStudio-Server-2023.12.1+402-gfbf-2023b-Java-11-R-4.3.3.eb

Flamefire · 2024-03-07T12:18:54Z

Test report by @lazariv FAILED Build succeeded for 4 out of 5 (5 easyconfigs in total) i8022 - Linux Rocky Linux 8.7 (Green Obsidian), x86_64, AMD EPYC 7352 24-Core Processor, 4 x NVIDIA NVIDIA A100-SXM4-40GB, 545.23.08, Python 3.8.13 See https://gist.github.com/lazariv/bf98d51fc59b2fd2fa6343ae9f471ccf for a full test report.

I suspect you have parallel installations there as the error complains about missing package "brio" in R

as for combining ECs for PRs: It is usually better to open individual/smaller PRs. You did that for R itself, so don't include that EC here in this PR. Same for libgit2 which is a dependency of R and also in that other PR. Having them in both PR results in needless and potentially conflicting rebuilds.

lazariv · 2024-03-07T13:10:52Z

Test report by @lazariv
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
i8022 - Linux Rocky Linux 8.7 (Green Obsidian), x86_64, AMD EPYC 7352 24-Core Processor, 4 x NVIDIA NVIDIA A100-SXM4-40GB, 545.23.08, Python 3.8.13
See https://gist.github.com/lazariv/fe837b728a1a0c4beba72f3220ac7b64 for a full test report.

...uild/easyconfigs/r/RStudio-Server/RStudio-Server-2023.12.1+402-gfbf-2023b-Java-11-R-4.3.3.eb

easybuild/easyconfigs/y/yaml-cpp/yaml-cpp-0.8.0-GCCcore-13.2.0.eb

…1+402-gfbf-2023b-Java-11-R-4.3.3.eb Co-authored-by: Alexander Grund <Flamefire@users.noreply.github.com>

…1+402-gfbf-2023b-Java-11-R-4.3.3.eb Co-authored-by: Jasper Grimm <65227842+jfgrimm@users.noreply.github.com>

…asyconfigs into 20240307090339_new_pr_SOCI403

Removed unnecessary patches from 0.7.0

lazariv · 2024-03-07T16:39:21Z

Test report by @lazariv
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
i8022 - Linux Rocky Linux 8.7 (Green Obsidian), x86_64, AMD EPYC 7352 24-Core Processor, 4 x NVIDIA NVIDIA A100-SXM4-40GB, 545.23.08, Python 3.8.13
See https://gist.github.com/lazariv/9adb3a1c254361eda6aaf015591123f2 for a full test report.

lazariv · 2024-03-08T20:43:45Z

Test report by @lazariv
FAILED
Build succeeded for 1 out of 3 (3 easyconfigs in total)
n1590 - Linux RHEL 8.7 (Ootpa), x86_64, Intel(R) Xeon(R) Platinum 8470, Python 3.8.13
See https://gist.github.com/lazariv/e2acd25d64b09f3afdf3a5afff5df1ee for a full test report.

Flamefire · 2024-03-09T10:24:04Z

Test report by @lazariv FAILED Build succeeded for 1 out of 3 (3 easyconfigs in total) n1590 - Linux RHEL 8.7 (Ootpa), x86_64, Intel(R) Xeon(R) Platinum 8470, Python 3.8.13 See https://gist.github.com/lazariv/e2acd25d64b09f3afdf3a5afff5df1ee for a full test report.

Only Boost/1.83.0 and PostgreSQL/16.1 is missing. Rebuilding with --robot should install those

lazariv · 2024-03-09T13:04:56Z

Test report by @lazariv
SUCCESS
Build succeeded for 7 out of 7 (3 easyconfigs in total)
n1590 - Linux RHEL 8.7 (Ootpa), x86_64, Intel(R) Xeon(R) Platinum 8470, Python 3.8.13
See https://gist.github.com/lazariv/cf69a7c55bdf29cab9a387deb071ef16 for a full test report.

lazariv · 2024-03-11T08:25:37Z

Test report by @lazariv
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
i8022 - Linux Rocky Linux 8.7 (Green Obsidian), x86_64, AMD EPYC 7352 24-Core Processor, 1 x NVIDIA NVIDIA A100-SXM4-40GB, 545.23.08, Python 3.8.13
See https://gist.github.com/lazariv/9db90733135bf3c503dea714e5e0f466 for a full test report.

verdurin · 2024-03-13T12:52:55Z

Test report by @verdurin
SUCCESS
Build succeeded for 24 out of 24 (3 easyconfigs in total)
easybuild-c7.novalocal - Linux CentOS Linux 7.9.2009, x86_64, Intel Xeon Processor (Skylake, IBRS), Python 3.6.8
See https://gist.github.com/verdurin/ed8bf4875f945baab24e0168fefe99dc for a full test report.

verdurin · 2024-03-13T12:53:47Z

@boegelbot please test @ generoso

boegelbot · 2024-03-13T12:55:09Z

@verdurin: Request for testing this PR well received on login1

PR test command 'EB_PR=20060 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_20060 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 13089

Test results coming soon (I hope)...

Details

- notification for comment with ID 1994339684 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-03-13T13:34:19Z

Test report by @boegelbot
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
cns2 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/bdda13cd300a2c318e5b6cfadcf185eb for a full test report.

…asyconfigs into 20240307090339_new_pr_SOCI403

lazariv · 2024-05-24T12:24:46Z

@jfgrimm anything should be done here?

lexming · 2024-05-27T16:05:40Z

@lazariv no, this looks ready to be merged. I'll send the last remaining mandatory test.

…asyconfigs into 20240307090339_new_pr_SOCI403

lexming · 2024-05-27T16:18:20Z

@boegelbot: please test @ generoso

boegelbot · 2024-05-27T16:20:10Z

@lexming: Request for testing this PR well received on login1

PR test command 'EB_PR=20060 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_20060 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 13571

Test results coming soon (I hope)...

Details

- notification for comment with ID 2133791595 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-05-27T16:58:27Z

Test report by @boegelbot
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/cc1c3c135fa670cb8bebf26caf92007b for a full test report.

lexming · 2024-05-27T21:23:25Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-05-27T21:30:08Z

@lexming: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=20060 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_20060 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 4225

Test results coming soon (I hope)...

Details

- notification for comment with ID 2134059566 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-05-27T21:31:13Z

Test report by @boegelbot
FAILED
Build succeeded for 2 out of 3 (3 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/b37d2f9d0084209b783fcaae93b34dae for a full test report.

…3.eb

lexming · 2024-05-27T21:39:35Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-05-27T21:40:08Z

@lexming: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=20060 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_20060 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 4226

Test results coming soon (I hope)...

Details

- notification for comment with ID 2134070963 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-05-27T21:58:58Z

Test report by @boegelbot
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/664b18c5cf02d95aa394c3d271c948cb for a full test report.

lexming

It seems that in the meantime the tags of the rstudio repo gained the typical v prefix. No idea when that happened, but I had to update the tarball name of the sources.

LGTM

lexming · 2024-05-27T22:04:21Z

Merging, thanks @lazariv !

adding easyconfigs: SOCI-4.0.3-GCC-13.2.0.eb, yaml-cpp-0.8.0-GCCcore-…

aa3c0d5

…13.2.0.eb, RStudio-Server-2023.12.1+402-gfbf-2023b-Java-11-R-4.3.3.eb

Flamefire reviewed Mar 7, 2024

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Flamefire suggested changes Mar 7, 2024

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...uild/easyconfigs/r/RStudio-Server/RStudio-Server-2023.12.1+402-gfbf-2023b-Java-11-R-4.3.3.eb Outdated Show resolved Hide resolved

Remove R and libgit2

6870c37

jfgrimm reviewed Mar 7, 2024

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...uild/easyconfigs/r/RStudio-Server/RStudio-Server-2023.12.1+402-gfbf-2023b-Java-11-R-4.3.3.eb Outdated Show resolved Hide resolved

jfgrimm reviewed Mar 7, 2024

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easybuild/easyconfigs/y/yaml-cpp/yaml-cpp-0.8.0-GCCcore-13.2.0.eb Outdated Show resolved Hide resolved

lazariv and others added 5 commits March 7, 2024 16:54

Update easybuild/easyconfigs/r/RStudio-Server/RStudio-Server-2023.12.…

1b2ec56

…1+402-gfbf-2023b-Java-11-R-4.3.3.eb Co-authored-by: Alexander Grund <Flamefire@users.noreply.github.com>

Update easybuild/easyconfigs/r/RStudio-Server/RStudio-Server-2023.12.…

f8a2008

…1+402-gfbf-2023b-Java-11-R-4.3.3.eb Co-authored-by: Jasper Grimm <65227842+jfgrimm@users.noreply.github.com>

Merge branch 'develop' of https://github.com/easybuilders/easybuild-e…

0068c93

…asyconfigs into 20240307090339_new_pr_SOCI403

Update yaml-cpp-0.8.0-GCCcore-13.2.0.eb

ecba19f

Removed unnecessary patches from 0.7.0

Update RStudio-Server-2023.12.1+402-gfbf-2023b-Java-11-R-4.3.3.eb

bd88aa9

lazariv added 2 commits March 12, 2024 09:45

Add checksum

af82e22

Merge branch 'develop' into 20240307090339_new_pr_SOCI403

a962daf

lazariv requested a review from jfgrimm March 12, 2024 10:09

Merge branch 'develop' of https://github.com/easybuilders/easybuild-e…

94a3547

…asyconfigs into 20240307090339_new_pr_SOCI403

Merge branch 'develop' of https://github.com/easybuilders/easybuild-e…

ae3630e

…asyconfigs into 20240307090339_new_pr_SOCI403

easybuilders deleted a comment from boegelbot May 27, 2024

fix sources in RStudio-Server-2023.12.1+402-gfbf-2023b-Java-11-R-4.3.…

00e717e

…3.eb

lexming approved these changes May 27, 2024

View reviewed changes

lexming merged commit 2c26f2f into easybuilders:develop May 27, 2024

boegel added this to the release after 4.9.1 milestone Jun 6, 2024

moravveji mentioned this pull request Jun 7, 2024

R-bundle-CRAN-2023b, Brunsli-0.1 patch, and easyconfigs.py #20756

Closed

branfosj mentioned this pull request Aug 13, 2024

add missMDA extension to R-bundle-CRAN 2023.12 #21167

Merged

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