{bio,chem}[foss/2023a] ESM-2 v2.0.0, topaz v0.2.5.20231120 w/ CUDA 12.1.1 by jfgrimm · Pull Request #19667 · easybuilders/easybuild-easyconfigs

jfgrimm · 2024-01-22T12:17:37Z

requires:

{ai}[foss/2023a] PyTorch v2.1.2 w/ CUDA 12.1.1 #19666

(created using eb --new-pr)

…5.20231120-foss-2023a-CUDA-12.1.1.eb, torchvision-0.16.2-foss-2023a-CUDA-12.1.1.eb

jfgrimm · 2024-01-24T11:59:04Z

Test report by @jfgrimm
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
gpu07.viking2.yor.alces.network - Linux Rocky Linux 8.8, x86_64, AMD EPYC 7643 48-Core Processor, 2 x NVIDIA NVIDIA A40, 535.86.10, Python 3.6.8
See https://gist.github.com/jfgrimm/75cd095d52f49dcd13af7353633bb101 for a full test report.

smoors · 2024-02-02T10:59:15Z

Test report by @smoors
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
node251.hydra.os - Linux Rocky Linux 8.8, x86_64, Intel(R) Xeon(R) CPU E5-2650 v4 @ 2.20GHz (broadwell), 1 x NVIDIA Tesla P100-PCIE-16GB, 545.23.06, Python 3.6.8
See https://gist.github.com/smoors/c2c8c71467bd658d373ee24f575193af for a full test report.

…asyconfigs into 20240122121733_new_pr_ESM-2200

jfgrimm · 2024-02-22T12:57:44Z

@boegelbot: please test @ generoso

boegelbot · 2024-02-22T13:00:07Z

@jfgrimm: Request for testing this PR well received on login1

PR test command 'EB_PR=19667 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_19667 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 12941

Test results coming soon (I hope)...

Details

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Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-02-22T13:01:03Z

Test report by @boegelbot
FAILED
Build succeeded for 0 out of 4 (3 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/21598569e5cfaa89fa0116234ed7444d for a full test report.

easybuild/easyconfigs/t/torchvision/torchvision-0.16.2-foss-2023a-CUDA-12.1.1.eb

easybuild/easyconfigs/p/PyTorch-bundle/PyTorch-bundle-2.1.2-foss-2023a-CUDA-12.1.1.eb

jfgrimm · 2024-02-27T12:04:36Z

Test report by @jfgrimm
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in total)
gpu25.viking2.yor.alces.network - Linux Rocky Linux 8.8, x86_64, AMD EPYC 7413 24-Core Processor, 1 x NVIDIA NVIDIA H100 PCIe, 535.86.10, Python 3.6.8
See https://gist.github.com/jfgrimm/7ea8bed156b3ef4a8458ccd41849c60a for a full test report.

jfgrimm · 2024-02-27T12:09:38Z

Test report by @jfgrimm
SUCCESS
Build succeeded for 4 out of 4 (4 easyconfigs in total)
gpu25.viking2.yor.alces.network - Linux Rocky Linux 8.8, x86_64, AMD EPYC 7413 24-Core Processor, 1 x NVIDIA NVIDIA H100 PCIe, 535.86.10, Python 3.6.8
See https://gist.github.com/jfgrimm/c6cde8bf37ae3318e8203152082f17d9 for a full test report.

easybuild/easyconfigs/t/topaz/topaz-0.2.5.20231120-foss-2023a-CUDA-12.1.1.eb

jfgrimm · 2024-02-27T13:43:42Z

@boegelbot: please test @ generoso

boegelbot · 2024-02-27T13:45:09Z

@jfgrimm: Request for testing this PR well received on login1

PR test command 'EB_PR=19667 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_19667 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 12976

Test results coming soon (I hope)...

Details

- notification for comment with ID 1966581804 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-02-27T13:58:54Z

Test report by @boegelbot
FAILED
Build succeeded for 2 out of 4 (4 easyconfigs in total)
cns1 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/13993ced947ca4441bca64717f044293 for a full test report.

easybuild/easyconfigs/p/PyTorch-bundle/PyTorch-bundle-2.1.2-foss-2023a-CUDA-12.1.1.eb

emdrago · 2024-02-27T23:18:52Z

Test report by @emdrago
FAILED
Build succeeded for 0 out of 1 (1 easyconfigs in total)
gput052 - Linux RHEL 8.7 (Ootpa), x86_64, Intel(R) Xeon(R) CPU E5-2630 v4 @ 2.20GHz, 1 x NVIDIA NVIDIA GeForce RTX 2080 Ti, 535.54.03, Python 3.9.13
See https://gist.github.com/emdrago/3729452d9411286fe8d15bd627eae272 for a full test report.

Micket · 2024-02-28T00:18:03Z

For reference: I made a PR for PyTorch-bundle combining all the current torch* PRs with some corrections + torchaudio
#19987

easybuild/easyconfigs/s/SentencePiece/SentencePiece-0.2.0-GCC-12.3.0.eb

…12.3.0.eb

jfgrimm · 2024-04-12T14:21:10Z

@Micket I've cleaned up the PR conflicts now that PyTorch-bundle is merged

smoors · 2024-05-17T08:56:29Z

@boegelbot please test @ jsc-zen3

boegelbot · 2024-05-17T09:00:10Z

@smoors: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=19667 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_19667 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

exit code: 0
output:

Submitted batch job 4138

Test results coming soon (I hope)...

Details

- notification for comment with ID 2117075676 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-05-17T09:02:42Z

Test report by @boegelbot
SUCCESS
Build succeeded for 2 out of 2 (2 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.4, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.18
See https://gist.github.com/boegelbot/0001fdb8e918bea872ad84dd9eb15ad0 for a full test report.

smoors · 2024-05-17T09:10:31Z

@boegelbot: please test @ generoso

boegelbot · 2024-05-17T09:15:09Z

@smoors: Request for testing this PR well received on login1

PR test command 'EB_PR=19667 EB_ARGS= EB_CONTAINER= EB_REPO=easybuild-easyconfigs /opt/software/slurm/bin/sbatch --job-name test_PR_19667 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 13482

Test results coming soon (I hope)...

Details

- notification for comment with ID 2117099667 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2024-05-17T09:33:46Z

Test report by @boegelbot
FAILED
Build succeeded for 1 out of 3 (2 easyconfigs in total)
cns2 - Linux Rocky Linux 8.9, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/boegelbot/414f2956f2bdacd400b776ae06150556 for a full test report.

smoors · 2024-05-17T09:41:42Z

build failure is for PyTorch-bundle, which was also seen in #20484
so gonna ignore it for this PR

smoors

lgtm

adding easyconfigs: ESM-2-2.0.0-foss-2023a-CUDA-12.1.1.eb, topaz-0.2.…

7455774

…5.20231120-foss-2023a-CUDA-12.1.1.eb, torchvision-0.16.2-foss-2023a-CUDA-12.1.1.eb

jfgrimm added the update label Jan 22, 2024

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jfgrimm mentioned this pull request Jan 22, 2024

{bio}[foss/2023a] RELION v5.0.0 w/ CUDA 12.1.1 #19678

Merged

12 tasks

add torchvision patch

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add 3dem patches for topaz

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This was referenced Feb 19, 2024

EvoDiff vscentrum/vsc-software-stack#289

Open

{bio}[foss/2023a] EvoDiff v1.1.0 w/ CUDA 12.1.1 #19939

Merged

jfgrimm added this to the 4.x milestone Feb 22, 2024

Merge branch 'develop' of https://github.com/easybuilders/easybuild-e…

0c5c092

…asyconfigs into 20240122121733_new_pr_ESM-2200

Micket reviewed Feb 27, 2024

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jfgrimm added 2 commits February 27, 2024 11:34

use PyTorch-bundle instead of separate torchvision easyconfig

8d01616

move patch

47793b2

jfgrimm commented Feb 27, 2024

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easybuild/easyconfigs/p/PyTorch-bundle/PyTorch-bundle-2.1.2-foss-2023a-CUDA-12.1.1.eb Outdated Show resolved Hide resolved

delete unused checksum

6bb22cf

jfgrimm commented Feb 27, 2024

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easybuild/easyconfigs/t/topaz/topaz-0.2.5.20231120-foss-2023a-CUDA-12.1.1.eb Outdated Show resolved Hide resolved

switch topaz to pytorch bundle

d8bb18c

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Micket reviewed Feb 27, 2024

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Merge branch 'develop' into 20240122121733_new_pr_ESM-2200

c45443f

jfgrimm commented Apr 12, 2024

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easybuild/easyconfigs/s/SentencePiece/SentencePiece-0.2.0-GCC-12.3.0.eb Outdated Show resolved Hide resolved

Update easybuild/easyconfigs/s/SentencePiece/SentencePiece-0.2.0-GCC-…

7cc4df1

…12.3.0.eb

jfgrimm changed the title ~~{bio,chem,vis}[foss/2023a] ESM-2 v2.0.0, topaz v0.2.5.20231120, torchvision v0.16.2 w/ CUDA 12.1.1~~ {bio,chem,vis}[foss/2023a] ESM-2 v2.0.0, topaz v0.2.5.20231120 w/ CUDA 12.1.1 Apr 12, 2024

jfgrimm changed the title ~~{bio,chem,vis}[foss/2023a] ESM-2 v2.0.0, topaz v0.2.5.20231120 w/ CUDA 12.1.1~~ {bio,chem}[foss/2023a] ESM-2 v2.0.0, topaz v0.2.5.20231120 w/ CUDA 12.1.1 Apr 12, 2024

jfgrimm requested a review from Micket April 12, 2024 14:21

smoors modified the milestones: 4.x, release after 4.9.1 May 17, 2024

smoors approved these changes May 17, 2024

View reviewed changes

smoors merged commit 78c0486 into easybuilders:develop May 17, 2024

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