{bio,numlib}[foss/2022a] phyx v1.3, Armadillo v11.4.3

easybuild/easyconfigs/a/Armadillo/Armadillo-11.4.3-foss-2022a.eb

@@ -0,0 +1,22 @@
+name = 'Armadillo'
+version = '11.4.3'
+
+homepage = 'https://arma.sourceforge.net/'
+description = """Armadillo is an open-source C++ linear algebra library (matrix maths) aiming towards
+ a good balance between speed and ease of use. Integer, floating point and complex numbers are supported,
+ as well as a subset of trigonometric and statistics functions."""
+
+toolchain = {'name': 'foss', 'version': '2022a'}
+
+source_urls = ['https://sourceforge.net/projects/arma/files']
+sources = [SOURCELOWER_TAR_XZ]
+checksums = ['87603263664988af41da2ca4f36205e36ea47a9281fa6cfd463115f3797a1da2']
+
+builddependencies = [('CMake', '3.24.3')]
+
+dependencies = [
+    ('Boost', '1.79.0'),
+    ('arpack-ng', '3.8.0'),
+]
+
+moduleclass = 'numlib'

easybuild/easyconfigs/p/phyx/phyx-1.3-foss-2022a.eb

@@ -0,0 +1,49 @@
+# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild
+easyblock = 'ConfigureMake'
+
+name = 'phyx'
+version = '1.3'
+
+homepage = 'https://github.com/FePhyFoFum/%(name)s'
+description = "phyx performs phylogenetics analyses on trees and sequences."
+
+toolchain = {'name': 'foss', 'version': '2022a'}
+toolchainopts = {'pic': True}
+
+github_account = 'FePhyFoFum'
+source_urls = [GITHUB_SOURCE]
+sources = ['v%(version)s.tar.gz']
+patches = ['%(name)s-%(version)s_link_flexiblas.patch']
+checksums = [
+    {'v1.3.tar.gz': 'b09677f98f997838b39cd2724463be06d0627ddc90a7e659dc90d4e02db624eb'},
+    {'phyx-1.3_link_flexiblas.patch': 'e9dc98da0f3c5df8e5b8ac3e64c2b0f77358f61fc60a4aadce5ad790b636ebdd'},
+]
+
+builddependencies = [
+    ('Autotools', '20220317'),
+]
+
+dependencies = [
+    ('Armadillo', '11.4.3'),
+    ('NLopt', '2.7.1'),
+]
+
+start_dir = 'src'
+
+preconfigopts = "autoreconf -f -i && "
+
+preinstallopts = 'mkdir %(installdir)s/bin && '
+
+sanity_check_paths = {
+    'files': ['bin/' + _exec for _exec in ["pxaa2cdn", "pxbdfit", "pxbdsim",
+                                           "pxboot", "pxbp", "pxcat", "pxclsq", "pxcltr", "pxcolt", "pxconsq",
+                                           "pxcontrates", "pxfqfilt", "pxlog", "pxlssq", "pxlstr", "pxmrca",
+                                           "pxmrcacut", "pxmrcaname", "pxnw", "pxrecode", "pxrevcomp",
+                                           "pxrls", "pxrlt", "pxrmk", "pxrms", "pxrmt", "pxrr", "pxs2fa", "pxs2nex",
+                                           "pxs2phy", "pxseqgen", "pxssort", "pxsstat", "pxstrec", "pxsw", "pxt2new",
+                                           "pxt2nex", "pxtcol", "pxtcomb", "pxtlate", "pxtrt", "pxtscale",
+                                           "pxvcf2fa"]],
+    'dirs': [],
+}
+
+moduleclass = 'bio'

easybuild/easyconfigs/p/phyx/phyx-1.3_link_flexiblas.patch

@@ -0,0 +1,14 @@
+replace linking with lapack and blas by flexiblas
+autor: Graham Derryberry
+diff -Naur phyx-1.3.orig/src/Makefile.in phyx-1.3/src/Makefile.in
+--- phyx-1.3.orig/src/Makefile.in	2023-04-12 22:44:14.000000000 -0400
++++ phyx-1.3/src/Makefile.in	2023-04-13 09:57:34.000000000 -0400
+@@ -17,7 +17,7 @@
+ HARM := @HARM@
+ HOMP := @HOMP@
+
+-CPP_LIBS = -llapack -lblas -lpthread -lm
++CPP_LIBS = -lflexiblas -lpthread -lm
+ ifeq "$(HNLOPT)" "Y"
+     CPP_LIBS += -lnlopt
+ endif