{devel,bio}[GCC/11.3.0,foss/2022a] CTPL v0.0.2, Xmipp v3.22.07-Helios w/ Python 3.10.4 by akesandgren · Pull Request #16498 · easybuilders/easybuild-easyconfigs

akesandgren · 2022-10-27T09:17:02Z

(created using eb --new-pr)

depends on: ~~easybuilders/easybuild-easyblocks#2809~~, ~~easybuilders/easybuild-easyblocks#2818~~

…mipp-3.22.07-Helios_correct_order_of_cu_includes.patch, Xmipp-3.22.07-Helios_dont_add_useless_libs.patch, Xmipp-3.22.07-Helios_dont_change_EB_build_flags.patch, Xmipp-3.22.07-Helios_drop_useless_CXXFLAGS_setting.patch, Xmipp-3.22.07-Helios_fix_scons_Environent_calls.patch, XmippCore-3.22.07-Helios_fix_scons_Environent_calls.patch, XmippCore-3.22.07-Helios_use_CXXFLAGS_from_EB.patch, XmippViz-3.22.07-Helios_fix_scons_Environent_calls.patch, XmippViz-3.22.07-Helios_use_CXXFLAGS_from_EB.patch

akesandgren · 2022-10-27T10:48:34Z

Test report by @akesandgren
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
b-an02.hpc2n.umu.se - Linux Ubuntu 20.04, x86_64, Intel(R) Xeon(R) CPU E5-2690 v4 @ 2.60GHz, Python 3.8.10
See https://gist.github.com/0ca936ee7b86ae9f88c48bc409950f9b for a full test report.

branfosj · 2022-10-27T11:08:46Z

@boegelbot please test @ jsc-zen2

boegelbot · 2022-10-27T11:12:11Z

@branfosj: Request for testing this PR well received on jsczen2l1.int.jsc-zen2.easybuild-test.cluster

PR test command 'EB_PR=16498 EB_ARGS= /opt/software/slurm/bin/sbatch --job-name test_PR_16498 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen2.sh' executed!

exit code: 0
output:

Submitted batch job 1734

Test results coming soon (I hope)...

Details

- notification for comment with ID 1293363710 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2022-10-27T11:16:07Z

Test report by @boegelbot
FAILED
Build succeeded for 7 out of 9 (3 easyconfigs in total)
jsczen2c1.int.jsc-zen2.easybuild-test.cluster - Linux Rocky Linux 8.5, x86_64, AMD EPYC 7742 64-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/4656ace7d3846d44fbbc92fb9cd9b572 for a full test report.

edit: failure is Don't know how to configure OpenCV in accordance with --optarch='{'Intel': 'march=core-avx2'}'

edit2: built in #16276 (comment)

branfosj · 2022-10-27T11:28:29Z

@boegelbot please test @ generoso

boegelbot · 2022-10-27T11:30:10Z

@branfosj: Request for testing this PR well received on login1

PR test command 'EB_PR=16498 EB_ARGS= EB_CONTAINER= /opt/software/slurm/bin/sbatch --job-name test_PR_16498 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 9391

Test results coming soon (I hope)...

Details

- notification for comment with ID 1293386347 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2022-10-27T11:43:20Z

Test report by @boegelbot
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
cns2 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/a144fc349caae960062f1844a2626d31 for a full test report.

branfosj · 2022-10-27T11:51:48Z

@boegelbot please test @ jsc-zen2

boegelbot · 2022-10-27T11:52:08Z

@branfosj: Request for testing this PR well received on jsczen2l1.int.jsc-zen2.easybuild-test.cluster

PR test command 'EB_PR=16498 EB_ARGS= /opt/software/slurm/bin/sbatch --job-name test_PR_16498 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen2.sh' executed!

exit code: 0
output:

Submitted batch job 1736

Test results coming soon (I hope)...

Details

- notification for comment with ID 1293411696 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2022-10-27T11:58:45Z

Test report by @boegelbot
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
jsczen2c1.int.jsc-zen2.easybuild-test.cluster - Linux Rocky Linux 8.5, x86_64, AMD EPYC 7742 64-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/39f0fd760a00b05dade0cd227e72e71a for a full test report.

branfosj · 2022-10-27T12:24:23Z

Test report by @branfosj
SUCCESS
Build succeeded for 25 out of 25 (3 easyconfigs in total)
bear-pg0105u36b.bear.cluster - Linux RHEL 8.6, x86_64, Intel(R) Xeon(R) Platinum 8360Y CPU @ 2.40GHz (icelake), Python 3.6.8
See https://gist.github.com/6a0a7f98ba50c7f79a5d89af1157a8ca for a full test report.

branfosj

It is looking for OpenCV and HDF5 in Python?

easybuild/easyconfigs/x/Xmipp/Xmipp-3.22.07-Helios-foss-2022a.eb

branfosj · 2022-10-28T08:49:52Z

@boegelbot please test @ jsc-zen2

boegelbot · 2022-10-28T08:52:08Z

@branfosj: Request for testing this PR well received on jsczen2l1.int.jsc-zen2.easybuild-test.cluster

PR test command 'EB_PR=16498 EB_ARGS= /opt/software/slurm/bin/sbatch --job-name test_PR_16498 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen2.sh' executed!

exit code: 0
output:

Submitted batch job 1739

Test results coming soon (I hope)...

Details

- notification for comment with ID 1294717041 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

boegelbot · 2022-10-28T08:58:39Z

Test report by @boegelbot
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
jsczen2c1.int.jsc-zen2.easybuild-test.cluster - Linux Rocky Linux 8.5, x86_64, AMD EPYC 7742 64-Core Processor (zen2), Python 3.6.8
See https://gist.github.com/fe302f34fba77796f76b068e7f7524d8 for a full test report.

branfosj · 2022-10-28T09:00:09Z

@boegelbot please test @ generoso

boegelbot · 2022-10-28T09:00:14Z

@branfosj: Request for testing this PR well received on login1

PR test command 'EB_PR=16498 EB_ARGS= EB_CONTAINER= /opt/software/slurm/bin/sbatch --job-name test_PR_16498 --ntasks=4 ~/boegelbot/eb_from_pr_upload_generoso.sh' executed!

exit code: 0
output:

Submitted batch job 9400

Test results coming soon (I hope)...

Details

- notification for comment with ID 1294727869 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

branfosj · 2022-10-28T09:01:56Z

Test report by @branfosj
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
bear-pg0105u36b.bear.cluster - Linux RHEL 8.6, x86_64, Intel(R) Xeon(R) Platinum 8360Y CPU @ 2.40GHz (icelake), Python 3.6.8
See https://gist.github.com/ca59b84e20ade9be754c4e076dcd868e for a full test report.

boegelbot · 2022-10-28T09:13:24Z

Test report by @boegelbot
SUCCESS
Build succeeded for 3 out of 3 (3 easyconfigs in total)
cns1 - Linux Rocky Linux 8.5, x86_64, Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz (haswell), Python 3.6.8
See https://gist.github.com/9727482dccea27103f3dc4ce0ce80c53 for a full test report.

branfosj · 2022-10-28T09:14:54Z

Going in, thanks @akesandgren!

akesandgren added the update label Oct 27, 2022

akesandgren added this to the 4.x milestone Oct 27, 2022

Add missing CTPL dep

265e270

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akesandgren added 2 commits October 27, 2022 12:33

Add missing SCons dep

191e0c2

SCons: Fix typo

1edcba7

branfosj requested changes Oct 27, 2022

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easybuild/easyconfigs/x/Xmipp/Xmipp-3.22.07-Helios-foss-2022a.eb Show resolved Hide resolved

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branfosj modified the milestones: 4.x, next release (4.6.3?) Oct 28, 2022

branfosj approved these changes Oct 28, 2022

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branfosj merged commit e3e7d5c into easybuilders:develop Oct 28, 2022

akesandgren deleted the 20221027111616_new_pr_Xmipp32207Helios branch October 28, 2022 09:24

SebastianAchilles added the new label Jan 6, 2023

SebastianAchilles changed the title ~~{bio}[foss/2022a] Xmipp v3.22.07-Helios w/ Python 3.10.4~~ {devel,bio}[GCC/11.3.0,foss/2022a] CTPL v0.0.2, Xmipp v3.22.07-Helios w/ Python 3.10.4 Jan 6, 2023

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