handle $PATH environment variable with module_load_environment in init of Binary easyblock

[lexming]

This went through the cracks with the introduction of module_load_environment in EB5

[ocaisa]

@boegelbot please test @ jsc-zen3
EB_ARGS="Baysor-0.7.1.eb --installpath /tmp/$USER/ebpr-3787"

[boegelbot]

@ocaisa: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=3787 EB_ARGS="Baysor-0.7.1.eb --installpath /tmp/$USER/ebpr-3787" EB_REPO=easybuild-easyblocks EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_3787 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

• exit code: 0
• output:

Submitted batch job 6876

Test results coming soon (I hope)...

Details

- notification for comment with ID 2983049216 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[boegelbot]

Test report by @boegelbot

Overview of tested easyconfigs (in order)

• FAIL (build issue) Baysor-0.7.1.eb (partial log available at https://gist.github.com/boegelbot/dd5a43beb6d1b9dfe15ecd636aa22d83)

Build succeeded for 0 out of 1 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/c68f795959dd1f5f67937d10759d6355 for a full test report.

[ocaisa]

@lexming For the only existing case I could find, this doesn't seem to be working: https://gist.github.com/boegelbot/dd5a43beb6d1b9dfe15ecd636aa22d83#file-baysor-0-7-1_partial-log-L327

[lexming]

@ocaisa I made a stupid mistake, it was not properly handling the list in that option. Fixed in f81244c

[lexming]

@boegelbot please test @ jsc-zen3
EB_ARGS="Baysor-0.7.1.eb --installpath /tmp/$USER/ebpr-3787"

[boegelbot]

@lexming: Request for testing this PR well received on jsczen3l1.int.jsc-zen3.fz-juelich.de

PR test command 'if [[ develop != 'develop' ]]; then EB_BRANCH=develop ./easybuild_develop.sh 2> /dev/null 1>&2; EB_PREFIX=/home/boegelbot/easybuild/develop source init_env_easybuild_develop.sh; fi; EB_PR=3787 EB_ARGS="Baysor-0.7.1.eb --installpath /tmp/$USER/ebpr-3787" EB_REPO=easybuild-easyblocks EB_BRANCH=develop /opt/software/slurm/bin/sbatch --job-name test_PR_3787 --ntasks=8 ~/boegelbot/eb_from_pr_upload_jsc-zen3.sh' executed!

• exit code: 0
• output:

Submitted batch job 6913

Test results coming soon (I hope)...

Details

- notification for comment with ID 2988693803 processed

Message to humans: this is just bookkeeping information for me,
it is of no use to you (unless you think I have a bug, which I don't).

[boegelbot]

Test report by @boegelbot

Overview of tested easyconfigs (in order)

• SUCCESS Baysor-0.7.1.eb

Build succeeded for 1 out of 1 (1 easyconfigs in total)
jsczen3c1.int.jsc-zen3.fz-juelich.de - Linux Rocky Linux 9.5, x86_64, AMD EPYC-Milan Processor (zen3), Python 3.9.21
See https://gist.github.com/boegelbot/be44a4d214255d6ee0dae219a7196e68 for a full test report.

[ocaisa]

LGTM

[ocaisa]

@ocaisa I made a stupid mistake, it was not properly handling the list in that option. Fixed in f81244c

Not allowed say that, mistakes are never stupid when the intention is good, no shame in them!