Skip to content

Fix for lack of unitcell; better colorbar scaling #64

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
sroet merged 1 commit into from
Nov 17, 2019
Merged

Fix for lack of unitcell; better colorbar scaling #64

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
5 changes: 5 additions & 0 deletions contact_map/contact_map.py
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,6 +1,8 @@
"""
Contact map analysis.
"""
# Maintainer: David W.H. Swenson (dwhs@hyperblazer.net)
# Licensed under LGPL, version 2.1 or greater
import collections
import itertools
import pickle
Expand Down Expand Up @@ -59,6 +61,9 @@ def _atom_slice(traj, indices):
if traj._have_unitcell:
unitcell_lengths = traj._unitcell_lengths.copy()
unitcell_angles = traj._unitcell_angles.copy()
else:
unitcell_lengths = None
unitcell_angles = None
time = traj._time.copy()

# Hackish to make the smart slicing work
Expand Down
2 changes: 1 addition & 1 deletion contact_map/plot_utils.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -42,7 +42,7 @@ def ranged_colorbar(cmap, norm, cbmin, cbmax, name="Partial Map"):
new_norm = matplotlib.colors.Normalize(vmin=cbmin, vmax=cbmax)
sm = plt.cm.ScalarMappable(cmap=new_cmap, norm=new_norm)
sm._A = []
cb = plt.colorbar(sm)
cb = plt.colorbar(sm, fraction=0.046, pad=0.04)
return cb