---

-------------0---A-------A-------PPPPPP-----------------
-------------O--A------A-A------P-------P---------------
-------------O-A------A---A-----P------P----------------
-------------0A------AAAAAA---PPPPP------------------
-------------O-A----A-------A---P-----------------------
-------------O--A--A---------A--P-----------------------
----------Kinetic Algorithm for Proton-radiography—---

KAP

Kinetic Algorithm for Proton-radiography.

• electro-magnetic fields are set in the input pyhon file

• protons are described in a kinetic way,
  dynamics is solved using first order interpolation of em fields

*code pretends to be parallel.

stack: C++11, MPI, HDF5, python2-3.

---

HOWTO

---

1. before 'make' need to set in makefile
   HDF5_PATH= path to hdf5 lib
   MPI_PATH= path to mpi lib
   PYTHON_INC= path to python2.7-3 include
   PYTHON_LIB= path to python2.7-3 lib

2. for running default example from src/input/Initializer.py
   mpirun -n 1 kap.exe

3. normally need to set input python file
   mpirun -n 1 kap.exe PATH/TO/PYTHON/INPUT/FILE

4. before running need to create output folder and set in the python file

5. for visualization use python notebook KAP

---

MPI and HDF5 installation

---

download openmpi v 4.0.5 from download.open-mpi.org/release/open-mpi/v4.0/openmpi-4.0.5.tar.gz

extract in folder /TEMP/FLD4INSTALLATION/, go to the folder

run in terminal:

1. ./configure --prefix=/FLD2LIBS/openmpi CFLAGS=-m64 CXXFLAGS=-m64 FFLAGS=-m64 FCFLAGS=-m64
   // need to specify 64-bit compilation via additional flag that should be passed to ALL compilers
2. make
3. make install

download hdf5 v1.10.5 from http://hdfgroup.org/package/hdf5-1-10-5-tar-gz/?wpdmdl=13571

run in terminal:

1. ./configure --prefix=/FLD2LIBS/hdf5 --enable-parallel CC=/FLD2LIBS/openmpi/bin/mpicc
2. make
3. make install