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[v0.x] Backport CI from Master to v0.x #1531

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107 changes: 107 additions & 0 deletions .github/workflows/buildwebsite.yml
Original file line number Diff line number Diff line change
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name: v0.x continuous build - docs

on: [push, pull_request_target]

defaults:
run:
shell: bash

jobs:
website-build:
runs-on: ubuntu-latest
strategy:
fail-fast: false
steps:
- name: Checkout repository
uses: actions/checkout@v2

- name: Setup python
uses: actions/setup-python@v2
with:
python-version: 3.7
architecture: x64

- name: Configure AWS Credentials
uses: aws-actions/configure-aws-credentials@v1
with:
aws-access-key-id: ${{ secrets.AWS_ACCESS_KEY_ID }}
aws-secret-access-key: ${{ secrets.AWS_SECRET_ACCESS_KEY }}
aws-region: us-east-1

- name: Install Other Dependencies
run: |
python -m pip install --quiet --upgrade pip
python -m pip install --quiet boto3
- name: Build Website (For push)
if: ${{ (failure() || success()) && github.event_name == 'push' }}
run: |
python ./ci/batch/submit-job.py --region us-east-1 \
--job-type g4dn.4x \
--name GluonNLP-Website-v0.x-${{ github.ref }} \
--remote https://github.com/${{ github.repository }} \
--source-ref ${{ github.ref }} \
--work-dir . \
--saved-output docs/tutorials \
--save-path tutorials \
--command "wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh \
&& chmod +x Miniconda3-latest-Linux-x86_64.sh \
&& bash ./Miniconda3-latest-Linux-x86_64.sh -b -p $HOME/miniconda \
&& source ci/prepare_clean_env.sh gpu/cy3 \
&& python3 -m pip install mxnet-cu102==1.6.0.post0 flaky numpy==1.18.4 \
&& ./ci/batch/compile_notebooks.sh \
'push' ${GITHUB_REF##*/}" \
--wait | tee build_website.log

- name: Build Website (For pull request)
if: ${{ (failure() || success()) && (github.event_name == 'pull_request' || github.event_name == 'pull_request_target') }}
run: |
python ./ci/batch/submit-job.py --region us-east-1 \
--job-type g4dn.4x \
--name GluonNLP-Website-v0.x-PR#${{ github.event.number }} \
--remote https://github.com/${{ github.event.pull_request.head.repo.full_name }} \
--source-ref ${{ github.event.pull_request.head.sha }} \
--work-dir . \
--saved-output docs/tutorials \
--save-path tutorials \
--command "wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh \
&& chmod +x Miniconda3-latest-Linux-x86_64.sh \
&& bash ./Miniconda3-latest-Linux-x86_64.sh -b -p $HOME/miniconda \
&& source ci/prepare_clean_env.sh gpu/cy3 \
&& python3 -m pip install mxnet-cu102==1.6.0.post0 flaky numpy==1.18.4 \
&& ./ci/batch/compile_notebooks.sh \
${{ github.event.number }} ${{ github.event.pull_request.head.sha }}" \
--wait | tee build_website.log

- name: Wait for job and copy logs from AWS s3
if: ${{ failure() || success() }}
run: |
head -100 build_website.log | grep -oP -m 1 'jobId: \K(.*)' > jobid.log

echo "Job ID is"
cat jobid.log
cat jobid.log | xargs -i python ./tools/batch/wait-job.py --job-id {}
echo "Copy Log file"
cat jobid.log | xargs -i aws s3api wait object-exists --bucket gluon-nlp-dev --key batch/{}/tutorials/index.rst
cat jobid.log | xargs -i aws s3 cp s3://gluon-nlp-dev/batch/{}/tutorials tutorials --recursive

- name: Upload Notebook Compile Logs
if: ${{ failure() || success() }}
uses: actions/upload-artifact@v2
with:
name: Notebook_Logs
path: ./tutorials/**/*.stdout.log

- name: Upload Website Build Log
if: ${{ failure() || success() }}
uses: actions/upload-artifact@v2
with:
name: Website_Log
path: ./build_website.log

- name: Create comment
if: ${{ github.event_name == 'pull_request' || github.event_name == 'pull_request_target' }}
uses: peter-evans/create-or-update-comment@v1
with:
issue-number: ${{ github.event.number }}
body: |
The documentation website for preview: http://gluon-nlp-staging.s3-accelerate.dualstack.amazonaws.com/PR${{ github.event.number }}/${{ github.event.pull_request.head.sha }}/index.html
106 changes: 106 additions & 0 deletions .github/workflows/unittests-gpu.yml
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@@ -0,0 +1,106 @@
name: v0.x continuous build - gpu

on: [push, pull_request_target]

defaults:
run:
shell: bash

jobs:
unittest-gpu:
runs-on: ubuntu-latest
strategy:
fail-fast: false
steps:
- name: Checkout repository
uses: actions/checkout@v2

- name: Install Linux dependencies
run: sudo apt-get install libopenblas-dev

- name: Setup python
uses: actions/setup-python@v2
with:
python-version: 3.7
architecture: x64

- name: Install Other Dependencies
run: |
python -m pip install --quiet --upgrade pip
python -m pip install --quiet boto3

- name: Configure AWS Credentials
uses: aws-actions/configure-aws-credentials@v1
with:
aws-access-key-id: ${{ secrets.AWS_ACCESS_KEY_ID }}
aws-secret-access-key: ${{ secrets.AWS_SECRET_ACCESS_KEY }}
aws-region: us-east-1

- name: Test project on AWS Batch(For push)
if: ${{ github.event_name == 'push' }}
run: |
echo "Start submitting job"
python ./ci/batch/submit-job.py --region us-east-1 \
--job-type g4dn.4x \
--name GluonNLP-GPU-v0.x-Test-${{ github.ref }} \
--source-ref ${{ github.ref }} \
--work-dir . \
--saved-output coverage.xml \
--save-path coverage.xml \
--remote https://github.com/${{ github.repository }} \
--command "wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh \
&& chmod +x Miniconda3-latest-Linux-x86_64.sh \
&& bash ./Miniconda3-latest-Linux-x86_64.sh -b -p $HOME/miniconda \
&& source ci/prepare_clean_env.sh gpu/cy3 \
&& python3 -m pip install mxnet-cu102==1.6.0.post0 flaky numpy==1.18.4 \
&& pytest -m 'gpu and not serial' --durations=30 --cov=. --cov-config=./.coveragerc --cov-report=xml tests/unittest" \
--wait | tee batch_job.log

- name: Test project on AWS Batch(For pull request)
if: ${{ github.event_name == 'pull_request' || github.event_name == 'pull_request_target' }}
run: |
echo "Start submitting job"
python ./ci/batch/submit-job.py --region us-east-1 \
--job-type g4dn.4x \
--name GluonNLP-GPU-v0.x-Test-PR#${{ github.event.number }} \
--source-ref ${{ github.event.pull_request.head.sha }} \
--work-dir . \
--saved-output coverage.xml \
--save-path coverage.xml \
--remote https://github.com/${{ github.event.pull_request.head.repo.full_name }} \
--command "wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh \
&& chmod +x Miniconda3-latest-Linux-x86_64.sh \
&& bash ./Miniconda3-latest-Linux-x86_64.sh -b -p $HOME/miniconda \
&& source ci/prepare_clean_env.sh gpu/cy3 \
&& python3 -m pip install mxnet-cu102==1.6.0.post0 flaky numpy==1.18.4 \
&& pytest -m 'gpu and not serial' --durations=30 --cov=. --cov-config=./.coveragerc --cov-report=xml tests/unittest" \
--wait | tee batch_job.log

- name: Wait for job and copy files from AWS s3
if: ${{ failure() || success() }}
run: |
head -100 batch_job.log | grep -oP -m 1 'jobId: \K(.*)' > jobid.log
echo "Job ID is"
cat jobid.log
cat jobid.log | xargs -i python ./tools/batch/wait-job.py --job-id {}
echo "Copy Codecov file"
cat jobid.log | xargs -i aws s3api wait object-exists --bucket gluon-nlp-dev --key batch/{}/coverage.xml
cat jobid.log | xargs -i aws s3 cp s3://gluon-nlp-dev/batch/{}/coverage.xml ./coverage.xml

- name: Upload coverage to Codecov
run: |
curl -s https://codecov.io/bash -o codecov.sh
if [ "$EVENT_NAME" == "push" ]; then \
bash codecov.sh -f ./coverage.xml -n -F -B v0.x; \
else \
bash codecov.sh -f ./coverage.xml -n -F -B v0.x -C ${{ github.event.pull_request.head.sha }} -P ${{ github.event.pull_request.number }}; \
fi
env:
EVENT_NAME: ${{ github.event_name }}

- name: Upload Cloud Watch Log Stream
if: ${{ failure() || success() }}
uses: actions/upload-artifact@v2
with:
name: Test_Logs
path: ./batch_job.log
105 changes: 105 additions & 0 deletions .github/workflows/unittests.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,105 @@
name: v0.x continuous build

on: [push, pull_request_target]

defaults:
run:
shell: bash

jobs:
unittest-gpu:
runs-on: ubuntu-latest
strategy:
fail-fast: false
steps:
- name: Checkout repository
uses: actions/checkout@v2

- name: Install Linux dependencies
run: sudo apt-get install libopenblas-dev

- name: Setup python
uses: actions/setup-python@v2
with:
python-version: 3.7
architecture: x64

- name: Install Other Dependencies
run: |
python -m pip install --quiet --upgrade pip
python -m pip install --quiet boto3
- name: Configure AWS Credentials
uses: aws-actions/configure-aws-credentials@v1
with:
aws-access-key-id: ${{ secrets.AWS_ACCESS_KEY_ID }}
aws-secret-access-key: ${{ secrets.AWS_SECRET_ACCESS_KEY }}
aws-region: us-east-1

- name: Test project on AWS Batch(For push)
if: ${{ github.event_name == 'push' }}
run: |
echo "Start submitting job"
python ./ci/batch/submit-job.py --region us-east-1 \
--job-type c5n.4x \
--name GluonNLP-GPU-v0.x-Test-${{ github.ref }} \
--source-ref ${{ github.ref }} \
--work-dir . \
--saved-output coverage.xml \
--save-path coverage.xml \
--remote https://github.com/${{ github.repository }} \
--command "wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh \
&& chmod +x Miniconda3-latest-Linux-x86_64.sh \
&& bash ./Miniconda3-latest-Linux-x86_64.sh -b -p $HOME/miniconda \
&& source ci/prepare_clean_env.sh gpu/cy3 \
&& python3 -m pip install mxnet==1.6.0 flaky numpy==1.18.4 \
&& pytest -m 'not (gpu or serial)' --durations=30 --cov=. --cov-config=./.coveragerc --cov-report=xml tests/unittest" \
--wait | tee batch_job.log

- name: Test project on AWS Batch(For pull request)
if: ${{ github.event_name == 'pull_request' || github.event_name == 'pull_request_target' }}
run: |
echo "Start submitting job"
python ./ci/batch/submit-job.py --region us-east-1 \
--job-type c5n.4x \
--name GluonNLP-GPU-v0.x-Test-PR#${{ github.event.number }} \
--source-ref ${{ github.event.pull_request.head.sha }} \
--work-dir . \
--saved-output coverage.xml \
--save-path coverage.xml \
--remote https://github.com/${{ github.event.pull_request.head.repo.full_name }} \
--command "wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh \
&& chmod +x Miniconda3-latest-Linux-x86_64.sh \
&& bash ./Miniconda3-latest-Linux-x86_64.sh -b -p $HOME/miniconda \
&& source ci/prepare_clean_env.sh gpu/cy3 \
&& python3 -m pip install mxnet==1.6.0 flaky numpy==1.18.4 \
&& pytest -m 'not (gpu or serial)' --durations=30 --cov=. --cov-config=./.coveragerc --cov-report=xml tests/unittest" \
--wait | tee batch_job.log

- name: Wait for job and copy files from AWS s3
if: ${{ failure() || success() }}
run: |
head -100 batch_job.log | grep -oP -m 1 'jobId: \K(.*)' > jobid.log
echo "Job ID is"
cat jobid.log
cat jobid.log | xargs -i python ./tools/batch/wait-job.py --job-id {}
echo "Copy Codecov file"
cat jobid.log | xargs -i aws s3api wait object-exists --bucket gluon-nlp-dev --key batch/{}/coverage.xml
cat jobid.log | xargs -i aws s3 cp s3://gluon-nlp-dev/batch/{}/coverage.xml ./coverage.xml

- name: Upload coverage to Codecov
run: |
curl -s https://codecov.io/bash -o codecov.sh
if [ "$EVENT_NAME" == "push" ]; then \
bash codecov.sh -f ./coverage.xml -n -F -B v0.x; \
else \
bash codecov.sh -f ./coverage.xml -n -F -B v0.x -C ${{ github.event.pull_request.head.sha }} -P ${{ github.event.pull_request.number }}; \
fi
env:
EVENT_NAME: ${{ github.event_name }}

- name: Upload Cloud Watch Log Stream
if: ${{ failure() || success() }}
uses: actions/upload-artifact@v2
with:
name: Test_Logs
path: ./batch_job.log
60 changes: 60 additions & 0 deletions ci/batch/compile_notebooks.sh
Original file line number Diff line number Diff line change
@@ -0,0 +1,60 @@
#!/bin/bash
# Shell script for submitting AWS Batch jobs to compile notebooks

event=$1
ref=$2

FAIL=0

compile_notebook () {
local MDFILE=$1
DIR=$(dirname $MDFILE)
BASENAME=$(basename $MDFILE)
TARGETNAME=$(dirname $MDFILE)/${BASENAME%.md}.ipynb
LOGNAME=$(dirname $MDFILE)/${BASENAME%.md}.stdout.log

echo Compiling $BASENAME ...

python3 docs/md2ipynb.py ${MDFILE} &> $LOGNAME

EXIT_CODE=$?

if [ $EXIT_CODE -ne 0 ]; then
echo Compiling $BASENAME Failed, please download Notebook_Logs in build Artifacts for more details.
else
echo Compiling $BASENAME Succeeded
fi
exit $EXIT_CODE
}

pids=()

for f in $(find docs/tutorials -type f -name '*.md' -print); do
compile_notebook "$f" &
pids+=($!)
done;

for pid in "${pids[@]}"; do
wait "$pid" || let "FAIL+=1"
done;

if [ "$FAIL" == "0" ]; then
echo Building Website
make docs
EXIT_CODE=$?
if [ $EXIT_CODE -ne 0 ]; then
echo Building Website Failed.
exit $EXIT_CODE
else
echo Building Website Succeeded.
if [ "$1" == "push" ]; then
echo "Uploading docs to s3://gluon-nlp/$2/"
aws s3 sync --delete ./docs/_build/html/ s3://gluon-nlp/$2/ --quiet --acl public-read
else
echo "Uploading docs to s3://gluon-nlp-staging/PR$1/$2/"
aws s3 sync --delete ./docs/_build/html/ s3://gluon-nlp-staging/PR$1/$2/ --quiet --acl public-read
fi
fi
else
exit 1
fi
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