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* The changes to CRAM have introduced an incompatible change to CRAIEntry that affects CramSource in Disq. See the note about incompatible CRAM changes at https://github.com/samtools/htsjdk/releases/tag/2.17.0. This commit uses the new CRAIEntry API introduced in samtools/htsjdk#1256 * Convert catch for EOFException -> RuntimeEOFException * Use htsjdk 2.19.0
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