devitocodes · mloubout · Apr 25, 2024 · Apr 24, 2024 · Apr 25, 2024
diff --git a/.github/workflows/docker-bases.yml b/.github/workflows/docker-bases.yml
@@ -52,7 +52,7 @@ jobs:
         run: docker system prune -a -f
 
       - name: GCC image
-        uses: docker/build-push-action@v3
+        uses: docker/build-push-action@v5
         with:
           context: .
           file: './docker/Dockerfile.cpu'
@@ -61,6 +61,7 @@ jobs:
           build-args: 'arch=gcc'
           tags: 'devitocodes/bases:cpu-gcc'
 
+
 #######################################################
 ############## Intel OneApi CPU #######################
 #######################################################
@@ -93,7 +94,7 @@ jobs:
         run: docker system prune -a -f
 
       - name: ICX image
-        uses: docker/build-push-action@v3
+        uses: docker/build-push-action@v5
         with:
           context: .
           file: './docker/Dockerfile.intel'
@@ -103,7 +104,7 @@ jobs:
           tags: 'devitocodes/bases:cpu-icx'
 
       - name: SYCL CPU image
-        uses: docker/build-push-action@v3
+        uses: docker/build-push-action@v5
         with:
           context: .
           file: './docker/Dockerfile.intel'
@@ -113,7 +114,7 @@ jobs:
           tags: 'devitocodes/bases:cpu-sycl'
 
       - name: SYCL GPU image
-        uses: docker/build-push-action@v3
+        uses: docker/build-push-action@v5
         with:
           context: .
           file: './docker/Dockerfile.intel'
@@ -154,7 +155,7 @@ jobs:
         run: docker system prune -a -f
 
       - name: NVC image
-        uses: docker/build-push-action@v3
+        uses: docker/build-push-action@v5
         with:
           context: .
           file: './docker/Dockerfile.nvidia'
@@ -164,7 +165,7 @@ jobs:
           tags: 'devitocodes/bases:nvidia-nvc'
 
       - name: NVCC image
-        uses: docker/build-push-action@v3
+        uses: docker/build-push-action@v5
         with:
           context: .
           file: './docker/Dockerfile.nvidia'
@@ -174,7 +175,7 @@ jobs:
           tags: 'devitocodes/bases:nvidia-nvcc'
 
       - name: NVC host image
-        uses: docker/build-push-action@v3
+        uses: docker/build-push-action@v5
         with:
           context: .
           file: './docker/Dockerfile.nvidia'
@@ -215,7 +216,7 @@ jobs:
         run: docker system prune -a -f
 
       - name: AMD image
-        uses: docker/build-push-action@v3
+        uses: docker/build-push-action@v5
         with:
           context: .
           file: './docker/Dockerfile.amd'
@@ -224,7 +225,7 @@ jobs:
           tags: devitocodes/bases:amd
 
       - name: AMD HIP image
-        uses: docker/build-push-action@v3
+        uses: docker/build-push-action@v5
         with:
           context: .
           file: './docker/Dockerfile.amd'

diff --git a/.github/workflows/docker-devito.yml b/.github/workflows/docker-devito.yml
@@ -106,4 +106,4 @@ jobs:
 
       - name: Run tests
         run: |
-         docker run ${{ matrix.flag }} --rm --name testrun 'devitocodes/devito:${{ matrix.tag }}-dev' pytest ${{ matrix.test }}
+         docker run ${{ matrix.flag }} --rm -t --name testrun 'devitocodes/devito:${{ matrix.tag }}-dev' pytest ${{ matrix.test }}
diff --git a/.github/workflows/pytest-core-mpi.yml b/.github/workflows/pytest-core-mpi.yml
@@ -87,9 +87,9 @@ jobs:
 
       - name: Test with pytest
         run: |
-          docker run --rm -e CODECOV_TOKEN=${{ secrets.CODECOV_TOKEN }} -e OMP_NUM_THREADS=1 --name testrun devito_img pytest tests/test_mpi.py
+          docker run --rm -t -e CODECOV_TOKEN=${{ secrets.CODECOV_TOKEN }} -e OMP_NUM_THREADS=1 --name testrun devito_img pytest tests/test_mpi.py
 
       - name: Test examples with MPI
         run: |
-          docker run --rm ${{ matrix.mpiflag }} -e DEVITO_MPI=1 -e OMP_NUM_THREADS=1 --name examplerun devito_img mpiexec -n 2 pytest examples/seismic/acoustic
-          docker run --rm -e DEVITO_MPI=1 -e OMP_NUM_THREADS=1 --name examplerun devito_img mpiexec -n 2 pytest examples/seismic/tti
+          docker run --rm -t ${{ matrix.mpiflag }} -e DEVITO_MPI=1 -e OMP_NUM_THREADS=1 --name examplerun devito_img mpiexec -n 2 pytest examples/seismic/acoustic
+          docker run --rm -t -e DEVITO_MPI=1 -e OMP_NUM_THREADS=1 --name examplerun devito_img mpiexec -n 2 pytest examples/seismic/tti
diff --git a/.github/workflows/pytest-core-nompi.yml b/.github/workflows/pytest-core-nompi.yml
@@ -36,7 +36,7 @@ jobs:
            pytest-ubuntu-py310-gcc10-noomp,
            pytest-ubuntu-py312-gcc13-omp,
            pytest-ubuntu-py39-gcc9-omp,
-           pytest-osx-py37-clang-omp,
+           pytest-osx-py312-clang-omp,
            pytest-docker-py39-gcc-omp,
            pytest-docker-py39-icx-omp
         ]
@@ -84,8 +84,8 @@ jobs:
           language: "openmp"
           sympy: "1.9"
 
-        - name: pytest-osx-py37-clang-omp
-          python-version: '3.7'
+        - name: pytest-osx-py312-clang-omp
+          python-version: '3.12'
           os: macos-latest
           arch: "clang"
           language: "C"
@@ -112,7 +112,7 @@ jobs:
           test-set: 'adjoint'
 
         exclude:
-        - name: pytest-osx-py37-clang-omp
+        - name: pytest-osx-py312-clang-omp
           set: adjoint
 
     steps:
@@ -133,7 +133,7 @@ jobs:
     - name: Set run prefix
       run: |
           if [[ "${{ matrix.name }}" =~ "docker" ]]; then
-              echo "RUN_CMD=docker run --rm -e CODECOV_TOKEN=${{ secrets.CODECOV_TOKEN }} --name testrun devito_img"  >> $GITHUB_ENV
+              echo "RUN_CMD=docker run --rm -t -e CODECOV_TOKEN=${{ secrets.CODECOV_TOKEN }} --name testrun devito_img"  >> $GITHUB_ENV
           else
               echo "RUN_CMD=" >> $GITHUB_ENV
           fi

diff --git a/.github/workflows/pytest-gpu.yml b/.github/workflows/pytest-gpu.yml
@@ -57,7 +57,7 @@ jobs:
           base: "devitocodes/bases:nvidia-nvc"
           tags: ["self-hosted", "nvidiagpu"]
           test_drive_cmd: "nvidia-smi"
-          flags: '--gpus all --rm --name testrun-nvc'
+          flags: '--gpus all --rm -t --name testrun-nvc'
 
         - name: pytest-gpu-omp-amd
           test_files: "tests/test_adjoint.py tests/test_gpu_common.py tests/test_gpu_openmp.py"
@@ -66,7 +66,7 @@ jobs:
           test_drive_cmd: "rocm-smi"
           # Attach the AMD GPU devices `/dev` and add user to video and render (109 on wampa) group
           # Options from https://rocmdocs.amd.com/en/latest/ROCm_Virtualization_Containers/ROCm-Virtualization-&-Containers.html
-          flags: "--network=host --device=/dev/kfd --device=/dev/dri --ipc=host --group-add video --group-add $(getent group render | cut -d: -f3) --cap-add=SYS_PTRACE --security-opt seccomp=unconfined --rm --name testrun-amd"
+          flags: "--network=host --device=/dev/kfd --device=/dev/dri --ipc=host --group-add video --group-add $(getent group render | cut -d: -f3) --cap-add=SYS_PTRACE --security-opt seccomp=unconfined --rm -t --name testrun-amd"
 
     steps:
     - name: Checkout devito

diff --git a/.github/workflows/tutorials.yml b/.github/workflows/tutorials.yml
@@ -22,15 +22,14 @@ jobs:
     env:
       DEVITO_ARCH: "${{ matrix.compiler }}"
       DEVITO_LANGUAGE: ${{ matrix.language }}
-      PYTHON_VERSION: "3.9"
 
     strategy:
       # Prevent all build to stop if a single one fails
       fail-fast: false
       matrix:
         name: [
           tutos-ubuntu-gcc-py39,
-          tutos-osx-clang-py39,
+          tutos-osx-clang-py311,
           tutos-docker-gcc-py39
           ]
 
@@ -39,26 +38,29 @@ jobs:
             os: ubuntu-latest
             compiler: gcc
             language: "openmp"
+            pyver: "3.9"
 
-          - name: tutos-osx-clang-py39
+          - name: tutos-osx-clang-py311
             os: macos-latest
             compiler: clang
             language: "C"
+            pyver: "3.11"
 
           - name: tutos-docker-gcc-py39
             os: ubuntu-latest
             compiler: gcc
             language: "openmp"
+            pyver: "3.9"
 
     steps:
     - name: Checkout devito
       uses: actions/checkout@v4
 
-    - name: Set up Python 3.9
+    - name: Set up Python ${{ matrix.pyver }}
       if: "!contains(matrix.name, 'docker')"
       uses: actions/setup-python@v5
       with:
-        python-version: 3.9
+        python-version: ${{ matrix.pyver }}
 
     - uses: maxim-lobanov/setup-xcode@v1
       if: runner.os == 'macOS'
@@ -73,7 +75,7 @@ jobs:
     - name: Set run prefix
       run: |
           if [ "${{ matrix.name }}" == 'tutos-docker-gcc-py39' ]; then
-              echo "RUN_CMD=docker run --rm --name testrun devito_img" >> $GITHUB_ENV
+              echo "RUN_CMD=docker run --rm -t --name testrun devito_img" >> $GITHUB_ENV
           else
               echo "RUN_CMD=" >> $GITHUB_ENV
           fi

diff --git a/docker/Dockerfile.nvidia b/docker/Dockerfile.nvidia
@@ -130,7 +130,7 @@ RUN python3 -m venv /venv && \
     /venv/bin/pip install --no-cache-dir -r https://raw.githubusercontent.com/devitocodes/devito/master/requirements-nvidia.txt && \
     # Install jupyter and setup nvidia configs.
     /venv/bin/pip install --no-cache-dir jupyter && \
-    /venv/bin/jupyter serverextension enable dask_labextension && \
+    /venv/bin/jupyter server extension enable dask_labextension && \
     rm -rf ~/.cache/pip
 
 RUN apt-get clean && apt-get autoclean && apt-get autoremove -y && \