fix(cli): update permission prompt message for compiled binaries

[yazan-abdalrahman]

When running a compiled Deno program that requires permissions, the prompt message previously instructed users to rerun with --allow-* flags, which is incorrect for binaries.

Changes:

• Updated the permission prompt message to instruct users to specify required permissions during the compilation step using deno compile --allow-*.
• Adjusted PermissionDenied error messages to reflect the correct instructions for binaries.

This fix ensures that users are correctly informed about how to handle permissions for compiled Deno binaries.

Resolves #23250

[CLAassistant]

All committers have signed the CLA.

[lucacasonato]

Did you write this PR yourself, or is it AI generated? The addition of global_flags crate seems somewhat unnecessary?

[yazan-abdalrahman]

Did you write this PR yourself, or is it AI generated? The addition of global_flags crate seems somewhat unnecessary?

Hi @lucacasonato

I wrote it,
I searched about dependencies to help me pass a flag to indicate that I am running from binary and not uniray. I found this is_unary param in the prompt method; it was hardcoded with a value of true; it was not passed along with the flow, so it is difficult to update the flow to pass it, so we need a flag to indicate we are running from binary standalone by passing the flag. I believe this idea is better.

Do you have a better way?

[yazan-abdalrahman]

Hello @bartlomieju
, could you please review the latest changes?

[yazan-abdalrahman]

@bartlomieju Can we merge it?

[dsherret]

LGTM