sync template files and restructure docs/design, docs/reqstream, and docs/user_guide to new standards by Copilot · Pull Request #176 · demaconsulting/SpdxTool

Copilot · 2026-04-05T16:13:25Z

Pull Request

Description

Syncs updated agent/standards/lint files from the TemplateDotNetTool template, then restructures all design documentation, ReqStream requirements, ReviewMark configuration, and user guide to comply with the updated standards.

Template sync

Binary-copied from demaconsulting/TemplateDotNetTool:

AGENTS.md, .github/agents/*.md, .github/standards/*.md
lint.sh, lint.bat

Design doc restructure (`docs/design/`)

Files moved under system-named folders per design-documentation.md standard:

spdxtool-system.md → spdx-tool/spdx-tool.md
commands/*.md → spdx-tool/commands/*.md
self-test/*.md → spdx-tool/self-test/*.md
utility.md → spdx-tool/utility/utility.md
spdxtool-targets-system.md → spdx-tool-targets/spdx-tool-targets.md

ReqStream restructure (`docs/reqstream/`)

Same system-named folder reorganization per reqstream-usage.md standard. OTS folder stays at root level. New file added:

docs/reqstream/spdx-tool/commands/commands.yaml — Commands subsystem requirements linked to CommandTests.cs/UnknownCommandTests.cs

Requirement hierarchy corrections

Audited and corrected all test-links and children-links to respect the System → Subsystem → Unit hierarchy:

System requirements (spdx-tool.yaml): The --validate CLI requirements (SpdxTool-Cmd-Validate/Depth/ResultsTrx/ResultsJUnit) were moved from the SelfTest subsystem file into spdx-tool.yaml. They retain their IntegrationTests.cs system-level test links and now children:-link down to the corresponding SelfTest subsystem requirements.
SelfTest subsystem (self-test/self-test.yaml): Replaced with proper subsystem-level requirements (SpdxTool-SelfTest-Validate/Depth/ResultsTrx/ResultsJUnit) that link only to SelfTestTests.cs (subsystem tests calling Validate.Run() directly) and children:-link to the SpdxTool-ST-Orchestrate unit requirement. The validate.yaml orchestrator unit requirement was also corrected to link to SelfTestTests.cs instead of IntegrationTests.cs.
Command unit requirements (13 files): All command yaml files that were incorrectly linking to SpdxTool_* tests (in SelfTest/Validate*Tests.cs) have been updated to link exclusively to their corresponding Commands/*Tests.cs unit test methods.
Commands subsystem children-links: SpdxTool-Commands-Registry in commands.yaml now children:-links to all 18 command unit requirements.

User guide rename (`docs/user_guide/`)

Aligned repository layout with the technical-documentation.md standard:

docs/guide/ → docs/user_guide/
docs/user_guide/guide.md → docs/user_guide/introduction.md
Updated docs/user_guide/definition.yaml internal paths
Updated .reviewmark.yaml pattern from docs/guide/**/*.md → docs/user_guide/**/*.md
Updated .github/workflows/build.yaml Pandoc and Weasyprint references
Updated README.md [user-guide] link

`requirements.yaml`

All 38 include paths updated to new locations; commands.yaml added.

`.reviewmark.yaml`

Replaced 9 ad-hoc review-sets with 43 review-sets following the standard hierarchy:

1× Purpose (repo-wide)
Per-system: Architecture, Design, AllRequirements
Per-subsystem: Commands, SelfTest, Utility
Per-unit: 16 command units, 15 self-test units, 2 utility units, Context
1× OTS

Added docs/user_guide/**/*.md to needs-review: patterns so changes to the user guide correctly invalidate prior reviews.

Traceability fix (`commands.yaml` + `CommandTests.cs`)

Renamed the misleading test Command_GetMapString_MissingEntry_ThrowsException → Command_GetMapString_MissingEntry_ReturnsNull to accurately reflect that the method returns null for missing entries (not throw). Updated the corresponding tests: link in commands.yaml for unambiguous requirement→test traceability.

Type of Change

Bug fix (non-breaking change which fixes an issue)
New feature (non-breaking change which adds functionality)
Breaking change (fix or feature that would cause existing functionality to not work as expected)
Documentation update
Code quality improvement

Related Issues

Pre-Submission Checklist

Before submitting this pull request, ensure you have completed the following:

Build and Test

Code builds successfully: dotnet build --configuration Release
All unit tests pass: dotnet test --configuration Release
Self-validation tests pass:
dotnet run --project src/DemaConsulting.SpdxTool --configuration Release --framework net10.0
--no-build -- --validate
Code produces zero warnings

Code Quality

Code formatting is correct: dotnet format --verify-no-changes
New code has appropriate XML documentation comments
Static analyzer warnings have been addressed

Quality Checks

Please run the following checks before submitting:

All linters pass: ./lint.sh (Unix/macOS) or cmd /c lint.bat / ./lint.bat (Windows)

Testing

Added unit tests for new functionality
Updated existing tests if behavior changed
All tests follow the AAA (Arrange, Act, Assert) pattern
Test coverage is maintained or improved

Documentation

Updated README.md (if applicable)
Updated ARCHITECTURE.md (if applicable)
Added code examples for new features (if applicable)
Updated requirements.yaml (if applicable)

Additional Notes

dotnet reqstream --lint passes cleanly after these changes.

Agent-Logs-Url: https://github.com/demaconsulting/SpdxTool/sessions/2d68e269-bffa-4090-8d83-493ea0bd5485 Co-authored-by: Malcolmnixon <1863707+Malcolmnixon@users.noreply.github.com>

…andards Agent-Logs-Url: https://github.com/demaconsulting/SpdxTool/sessions/b0d7cbbd-e149-4563-8535-5d05bee7e30f Co-authored-by: Malcolmnixon <1863707+Malcolmnixon@users.noreply.github.com>

Malcolmnixon · 2026-04-05T16:13:33Z

@copilot Have you confirmed that all System requirements test-links only to the System dedicated test-suite (IntegrationTests) and 'children' requirements-links only to the subsystem or top-level unit requirements used to satisfy the system requirement.

Have you confirmed that all Subsystem requirements test-links only to the Subsystems dedicated test-suites and 'children' requirements-links only to the unit requirements used to satisfy the subsystem requirement.

Have you confirmed that all Unit requirements test-links only to the Units dedicated test-suites.

…erarchy standards Agent-Logs-Url: https://github.com/demaconsulting/SpdxTool/sessions/0bfb938b-cb98-4f20-893f-8c78ca9abc15 Co-authored-by: Malcolmnixon <1863707+Malcolmnixon@users.noreply.github.com>

Copilot · 2026-04-05T16:28:09Z

@copilot Have you confirmed that all System requirements test-links only to the System dedicated test-suite (IntegrationTests) and 'children' requirements-links only to the subsystem or top-level unit...

Fixed in commit 3a50d7d. The audit found three categories of violations that have been corrected:

System requirements (spdx-tool.yaml): The --validate CLI requirements (SpdxTool-Cmd-Validate/Depth/ResultsTrx/ResultsJUnit) were incorrectly placed in the SelfTest subsystem file and linked to IntegrationTests.cs system tests. These have been moved to spdx-tool.yaml, keep their links to IntegrationTests.cs (system-level), and now children:-link down to the new SelfTest subsystem requirements.

SelfTest subsystem requirements (self-test/self-test.yaml): Replaced with proper subsystem-level requirements (SpdxTool-SelfTest-Validate/Depth/ResultsTrx/ResultsJUnit) that link only to SelfTestTests.cs (subsystem-level tests calling Validate.Run() directly) and children:-link to the SpdxTool-ST-Orchestrate unit requirement. The validate.yaml orchestrator unit requirement was also fixed to link to SelfTestTests.cs instead of IntegrationTests.cs.

Command unit requirements (13 files): All command yaml files that were linking to SpdxTool_* tests (which are SelfTest/Validate*Tests.cs tests) have been updated to link exclusively to the corresponding Commands/*Tests.cs unit tests (e.g. AddPackage_InWorkflowWithRelationship_AddsPackageAndRelationship, Validate_ValidSpdxDocument_Succeeds, etc.).

Children-links: SpdxTool-Commands-Registry in commands.yaml now children:-links to all 18 command unit requirements, confirming that all registered commands are covered.

Copilot

Pull request overview

This PR syncs agent/standards/linting files from the TemplateDotNetTool template and restructures the repository’s design and ReqStream documentation into the updated “system/subsystem/unit” folder hierarchy, including expanded ReviewMark review-sets.

Changes:

Restructured design docs under docs/design/{system}/... and ReqStream requirements under docs/reqstream/{system}/..., updating root requirements.yaml includes.
Added/updated subsystem + unit requirement YAMLs (Commands/SelfTest/Utility) and expanded .reviewmark.yaml into a full hierarchical review-set catalog.
Updated lint scripts and refreshed agent/standards guidance files from the template.

Reviewed changes

Copilot reviewed 35 out of 91 changed files in this pull request and generated 3 comments.

Show a summary per file

File	Description
requirements.yaml	Updates includes to new ReqStream hierarchy and adds Commands subsystem requirements include.
lint.sh	Restructures lint execution into python/npm/dotnet sections with skip-on-failure behavior.
lint.bat	Mirrors lint.sh structure for Windows with skip-on-failure sections.
docs/reqstream/spdx-tool/utility/utility.yaml	Adds Utility subsystem requirements (SafePathCombine + Wildcard).
docs/reqstream/spdx-tool/spdx-tool.yaml	Adds system-level CLI self-validation requirements and links to subsystem children.
docs/reqstream/spdx-tool/self-test/self-test.yaml	Adds SelfTest subsystem-level requirements (validate/depth/results formats).
docs/reqstream/spdx-tool/self-test/validate.yaml	Updates orchestrator unit requirement test links to SelfTest unit tests.
docs/reqstream/spdx-tool/self-test/validate-add-package.yaml	Adds unit requirement for ValidateAddPackage step.
docs/reqstream/spdx-tool/self-test/validate-add-relationship.yaml	Adds unit requirement for ValidateAddRelationship step.
docs/reqstream/spdx-tool/self-test/validate-basic.yaml	Adds unit requirement for ValidateBasic step.
docs/reqstream/spdx-tool/self-test/validate-copy-package.yaml	Adds unit requirement for ValidateCopyPackage step.
docs/reqstream/spdx-tool/self-test/validate-diagram.yaml	Adds unit requirement for ValidateDiagram step.
docs/reqstream/spdx-tool/self-test/validate-find-package.yaml	Adds unit requirement for ValidateFindPackage step.
docs/reqstream/spdx-tool/self-test/validate-get-version.yaml	Adds unit requirement for ValidateGetVersion step.
docs/reqstream/spdx-tool/self-test/validate-hash.yaml	Adds unit requirement for ValidateHash step.
docs/reqstream/spdx-tool/self-test/validate-ntia.yaml	Adds unit requirement for ValidateNtia step.
docs/reqstream/spdx-tool/self-test/validate-query.yaml	Adds unit requirement for ValidateQuery step.
docs/reqstream/spdx-tool/self-test/validate-rename-id.yaml	Adds unit requirement for ValidateRenameId step.
docs/reqstream/spdx-tool/self-test/validate-run-nuget-workflow.yaml	Adds unit requirement for ValidateRunNuGetWorkflow step.
docs/reqstream/spdx-tool/self-test/validate-to-markdown.yaml	Adds unit requirement for ValidateToMarkdown step.
docs/reqstream/spdx-tool/self-test/validate-update-package.yaml	Adds unit requirement for ValidateUpdatePackage step.
docs/reqstream/spdx-tool/commands/commands.yaml	Adds Commands subsystem requirements and children-links to command units.
docs/reqstream/spdx-tool/commands/add-package.yaml	Updates AddPackage unit requirement test links to command unit tests.
docs/reqstream/spdx-tool/commands/add-relationship.yaml	Updates AddRelationship unit requirement test links to command unit tests.
docs/reqstream/spdx-tool/commands/copy-package.yaml	Updates CopyPackage unit requirement test links to command unit tests.
docs/reqstream/spdx-tool/commands/diagram.yaml	Updates Diagram unit requirement test links to command unit tests.
docs/reqstream/spdx-tool/commands/find-package.yaml	Updates FindPackage unit requirement test links to command unit tests.
docs/reqstream/spdx-tool/commands/get-version.yaml	Updates GetVersion unit requirement test links to command unit tests.
docs/reqstream/spdx-tool/commands/hash.yaml	Updates Hash unit requirement test links to command unit tests.
docs/reqstream/spdx-tool/commands/help.yaml	Adds Help unit requirement file in new location.
docs/reqstream/spdx-tool/commands/print.yaml	Adds Print unit requirement file in new location.
docs/reqstream/spdx-tool/commands/query.yaml	Updates Query unit requirement test links to command unit tests.
docs/reqstream/spdx-tool/commands/rename-id.yaml	Updates RenameId unit requirement test links to command unit tests.
docs/reqstream/spdx-tool/commands/run-workflow.yaml	Updates RunWorkflow unit requirement test links to RunWorkflow unit tests.
docs/reqstream/spdx-tool/commands/set-variable.yaml	Adds SetVariable unit requirement file in new location.
docs/reqstream/spdx-tool/commands/to-markdown.yaml	Updates ToMarkdown unit requirement test links to unit tests.
docs/reqstream/spdx-tool/commands/update-package.yaml	Updates UpdatePackage unit requirement test links to unit tests.
docs/reqstream/spdx-tool/commands/validate.yaml	Updates Validate unit requirement test links to Validate unit tests.
docs/reqstream/spdx-tool/platform-requirements.yaml	Adds platform/runtime requirements with source-filtered test evidence.
docs/reqstream/spdx-tool-targets/spdx-tool-targets.yaml	Adds Targets system requirements in new location.
docs/reqstream/self-test/self-test.yaml	Removes old SelfTest requirements file from prior hierarchy.
docs/design/introduction.md	Updates documented design/reqstream paths to new hierarchy.
docs/design/spdx-tool/spdx-tool.md	Adds system-level design doc in new folder structure.
docs/design/spdx-tool/utility/utility.md	Adds Utility subsystem design doc.
docs/design/spdx-tool/self-test/self-test.md	Adds SelfTest subsystem design doc.
docs/design/spdx-tool/self-test/validate.md	Adds SelfTest orchestrator (Validate.cs) unit design doc.
docs/design/spdx-tool/self-test/validate-add-package.md	Adds unit design doc for ValidateAddPackage.
docs/design/spdx-tool/self-test/validate-add-relationship.md	Adds unit design doc for ValidateAddRelationship.
docs/design/spdx-tool/self-test/validate-basic.md	Adds unit design doc for ValidateBasic.
docs/design/spdx-tool/self-test/validate-copy-package.md	Adds unit design doc for ValidateCopyPackage.
docs/design/spdx-tool/self-test/validate-diagram.md	Adds unit design doc for ValidateDiagram.
docs/design/spdx-tool/self-test/validate-find-package.md	Adds unit design doc for ValidateFindPackage.
docs/design/spdx-tool/self-test/validate-get-version.md	Adds unit design doc for ValidateGetVersion.
docs/design/spdx-tool/self-test/validate-hash.md	Adds unit design doc for ValidateHash.
docs/design/spdx-tool/self-test/validate-ntia.md	Adds unit design doc for ValidateNtia.
docs/design/spdx-tool/self-test/validate-query.md	Adds unit design doc for ValidateQuery.
docs/design/spdx-tool/self-test/validate-rename-id.md	Adds unit design doc for ValidateRenameId.
docs/design/spdx-tool/self-test/validate-run-nuget-workflow.md	Adds unit design doc for ValidateRunNuGetWorkflow.
docs/design/spdx-tool/self-test/validate-to-markdown.md	Adds unit design doc for ValidateToMarkdown.
docs/design/spdx-tool/self-test/validate-update-package.md	Adds unit design doc for ValidateUpdatePackage.
docs/design/spdx-tool/commands/commands.md	Adds Commands subsystem design doc.
docs/design/spdx-tool/commands/add-package.md	Adds AddPackage unit design doc.
docs/design/spdx-tool/commands/add-relationship.md	Adds AddRelationship unit design doc.
docs/design/spdx-tool/commands/copy-package.md	Adds CopyPackage unit design doc.
docs/design/spdx-tool/commands/diagram.md	Adds Diagram unit design doc.
docs/design/spdx-tool/commands/find-package.md	Adds FindPackage unit design doc.
docs/design/spdx-tool/commands/get-version.md	Adds GetVersion unit design doc.
docs/design/spdx-tool/commands/hash.md	Adds Hash unit design doc.
docs/design/spdx-tool/commands/help.md	Adds Help unit design doc.
docs/design/spdx-tool/commands/print.md	Adds Print unit design doc.
docs/design/spdx-tool/commands/query.md	Adds Query unit design doc.
docs/design/spdx-tool/commands/rename-id.md	Adds RenameId unit design doc.
docs/design/spdx-tool/commands/run-workflow.md	Adds RunWorkflow unit design doc.
docs/design/spdx-tool/commands/set-variable.md	Adds SetVariable unit design doc.
docs/design/spdx-tool/commands/to-markdown.md	Adds ToMarkdown unit design doc.
docs/design/spdx-tool/commands/update-package.md	Adds UpdatePackage unit design doc.
docs/design/spdx-tool/commands/validate.md	Adds Validate unit design doc.
docs/design/spdx-tool-targets/spdx-tool-targets.md	Adds Targets system design doc.
AGENTS.md	Updates agent guidance and repository structure references to new standards.
.reviewmark.yaml	Replaces ad-hoc review-sets with a hierarchical set covering systems/subsystems/units.
.github/standards/technical-documentation.md	Updates documentation layout standard to system-folder hierarchy.
.github/standards/design-documentation.md	Updates design doc layout standard to system-folder hierarchy.
.github/standards/reqstream-usage.md	Updates ReqStream folder hierarchy + clarifies test-linkage hierarchy.
.github/standards/reviewmark-usage.md	Updates ReviewMark guidance to hierarchical review-set structure.
.github/standards/software-items.md	Adds naming guidance when hierarchy name collisions occur.
.github/standards/csharp-testing.md	Updates AAA guidance and adds hierarchical test naming patterns.
.github/agents/repo-consistency.agent.md	Syncs agent report template placeholders/formatting.
.github/agents/quality.agent.md	Adds explicit Result field requirement and normalizes placeholders.
.github/agents/implementation.agent.md	Clarifies orchestrator context requirements and normalizes placeholders.
.github/agents/developer.agent.md	Adds lint-fix step requirement and normalizes placeholders.
.github/agents/code-review.agent.md	Normalizes placeholders and clarifies elaborate command formatting.

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docs/reqstream/spdx-tool/commands/commands.yaml

.github/standards/technical-documentation.md

.github/standards/reviewmark-usage.md

Malcolmnixon · 2026-04-05T16:41:43Z

@copilot apply changes based on the comments in this thread

…on.md Agent-Logs-Url: https://github.com/demaconsulting/SpdxTool/sessions/ee10c32f-291a-48b8-9984-34bcc3958200 Co-authored-by: Malcolmnixon <1863707+Malcolmnixon@users.noreply.github.com>

Copilot · 2026-04-05T16:43:39Z

@copilot apply changes based on the comments in this thread

Applied in commit 01ad6d7: renamed docs/guide/ → docs/user_guide/ and guide.md → introduction.md, updating all references across definition.yaml, .reviewmark.yaml, build.yaml, and README.md.

Copilot

Pull request overview

Copilot reviewed 38 out of 96 changed files in this pull request and generated 2 comments.

Comments suppressed due to low confidence (4)

docs/reqstream/spdx-tool/commands/get-version.yaml:18

The referenced test GetVersion_OnCommandLine_ReportsWorkflowOnlyError is misnamed: it asserts a successful CLI invocation and checks the returned version string (exit code 0). Since ReqStream evidence and review artifacts surface test names, this is likely to confuse auditors/readers. Rename the test to reflect its behavior (and update this tests: link), or link to a correctly named test if one exists.
docs/reqstream/spdx-tool/commands/find-package.yaml:18
The referenced test FindPackage_OnCommandLine_ReportsWorkflowOnlyError is misnamed: it asserts a successful CLI invocation and checks the returned package ID (exit code 0). Since ReqStream evidence and review artifacts surface test names, this is likely to confuse auditors/readers. Rename the test to reflect its behavior (and update this tests: link), or link to a correctly named test if one exists.
docs/reqstream/spdx-tool/commands/copy-package.yaml:18
The referenced test CopyPackage_OnCommandLine_ReportsWorkflowOnlyError is misnamed: it asserts a successful CLI invocation and verifies the destination SPDX now contains both packages (exit code 0). Since ReqStream evidence and review artifacts surface test names, this is likely to confuse auditors/readers. Rename the test to reflect its behavior (and update this tests: link), or link to a correctly named test if one exists.
docs/reqstream/spdx-tool/commands/add-relationship.yaml:20
The referenced test AddRelationship_OnCommandLine_ReportsWorkflowOnlyError is misnamed: it asserts a successful CLI invocation and verifies the relationship was added (exit code 0). Since ReqStream evidence and review artifacts surface test names, this is likely to confuse auditors/readers. Rename the test to reflect its behavior (and update this tests: link), or link to a correctly named test if one exists.

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.reviewmark.yaml

docs/reqstream/spdx-tool/commands/commands.yaml

Malcolmnixon · 2026-04-05T17:15:25Z

@copilot apply changes based on the comments in this thread

Agent-Logs-Url: https://github.com/demaconsulting/SpdxTool/sessions/32af83d4-f78d-4562-942b-4dae1f07732e Co-authored-by: Malcolmnixon <1863707+Malcolmnixon@users.noreply.github.com>

Copilot · 2026-04-05T17:16:49Z

@copilot apply changes based on the comments in this thread

Done in commit 606e76c:

Renamed Command_GetMapString_MissingEntry_ThrowsException → Command_GetMapString_MissingEntry_ReturnsNull in CommandTests.cs and updated the matching test link in commands.yaml
Added docs/user_guide/**/*.md to needs-review: in .reviewmark.yaml so user guide changes correctly invalidate prior reviews

Copilot

Pull request overview

Copilot reviewed 39 out of 97 changed files in this pull request and generated no new comments.

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Copilot AI and others added 2 commits April 5, 2026 15:36

chore: update files from TemplateDotNetTool template

ad0bac4

Agent-Logs-Url: https://github.com/demaconsulting/SpdxTool/sessions/2d68e269-bffa-4090-8d83-493ea0bd5485 Co-authored-by: Malcolmnixon <1863707+Malcolmnixon@users.noreply.github.com>

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Copilot AI changed the title ~~sync template files and restructure docs/design + docs/reqstream to new standards~~ sync template files and restructure docs/design, docs/reqstream, and docs/user_guide to new standards Apr 5, 2026

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sync template files and restructure docs/design, docs/reqstream, and docs/user_guide to new standards#176

sync template files and restructure docs/design, docs/reqstream, and docs/user_guide to new standards#176
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Pull Request

Description

Template sync

Design doc restructure (docs/design/)

ReqStream restructure (docs/reqstream/)

Requirement hierarchy corrections

User guide rename (docs/user_guide/)

requirements.yaml

.reviewmark.yaml

Traceability fix (commands.yaml + CommandTests.cs)

Type of Change

Related Issues

Pre-Submission Checklist

Build and Test

Code Quality

Quality Checks

Testing

Documentation

Additional Notes

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Design doc restructure (`docs/design/`)

ReqStream restructure (`docs/reqstream/`)

User guide rename (`docs/user_guide/`)

`requirements.yaml`

`.reviewmark.yaml`

Traceability fix (`commands.yaml` + `CommandTests.cs`)