- add
--db
to denote database dir by Redmar-van-den-Berg - Set index.sh script to exit immediately on failure by Redmar-van-den-Berg
- add
--minimap_index
to construct minimap2 index and reduce memory usage in mapping for long_read_typing.py - set
max depth
for long_read_typing.py - add
--strand_bias_pvalue_cutoff
for longshot in long_read_typing.py - convert sam to bam in long_read_typing.py