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Merge pull request #2302 from Over-There-Is/patch-4
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Update lineage_notes.txt
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@AngieHinrichs
AngieHinrichs authored Oct 3, 2023
2 parents 2a77486 + 66ae9c7 commit 1b91ead
Showing 1 changed file with 12 additions and 12 deletions.
24 changes: 12 additions & 12 deletions lineage_notes.txt
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Expand Up @@ -2676,7 +2676,7 @@ XBB Recombinant lineage of BJ.1 and BM.1.1.1 with breakpoint in S1, found in USA
XBB.1 Mostly Bangladesh and Singapore, defined by S:G252V, from issue #1088
XBB.1.1 Singapore/Denmark, defined by ORF1a:P309L
XBB.1.2 Singapore, defined by S:S640F
XBB.1.3 Singapore, India/Italy, defined by S:A484T
XBB.1.3 Singapore, India/Italy, defined by S:A484T, pre ORF8:8*
XBB.1.4 Europe, S:T883I
XBB.1.4.1 Mainly Denmark, Norway and Sweden, defined by S:S673G, from pango-designation issue #1352
XBB.1.4.2 S:486P, ORf1a:V3595F, Brazil, from #2031
Expand Down Expand Up @@ -2761,13 +2761,13 @@ XBB.1.5.41 S:V772I, S:P521T, USA, from #1941
GU.1 Alias of XBB.1.5.41.1, S:N481S, USA/Canada
XBB.1.5.42 S:E281D, Asia/USA, from #1933
GR.1 Alias of XBB.1.5.42.1, S:445S, Vietnam, from #1966
XBB.1.5.43 C18501T, Singapore/Malaysia/Indonesia
XBB.1.5.43 C18501T, pre T17124C, Singapore/Malaysia/Indonesia
XBB.1.5.44 S:K356T, S:T572I, USA, from #1907
HC.1 Alias of XBB.1.5.44.1, S:P631S, USA, from sars-cov-2-variants/lineage-proposals#106
HC.2 Alias of XBB.1.5.44.2, S:F157L, Canada, from #2202
HC.3 Alias of XBB.1.5.44.3, S:P793S, USA
HC.4 Alias of XBB.1.5.44.4, S:D1084H, ORF1a:A1352V, UK/Canada
XBB.1.5.45 S:478R, C27425T, G28079T, India-GJ/MH, from #1792
XBB.1.5.45 S:478R, C27425T, G28079T, pre T17124C, India-GJ/MH, from #1792
XBB.1.5.46 C5770T, C15279T, Germany/France
GB.1 Alias of XBB.1.5.46.1, S:L518V, France, from #1969
GB.2 Alias of XBB.1.5.46.2, S:478R, England/China, from #1891
Expand All @@ -2793,7 +2793,7 @@ HP.1 Alias of XBB.1.5.55.1, N:L13F, US/Mexico, from sars-cov-2-variants/lineage-
HP.1.1 Alias of XBB.1.5.55.1.1, S:478R, Mexico, from sars-cov-2-variants/lineage-proposals#277
XBB.1.5.56 S:A852S, USA
XBB.1.5.57 A20379G, C28312T, pre-T17124C, probable Spike-donor of XBL, #1973
XBB.1.5.58 S:704L, ORF1b:V1607I, ORF6:D6G, Guinea, from #1860
XBB.1.5.58 S:704L, ORF1b:V1607I, ORF6:D6G, pre T17124C, Guinea, from #1860
XBB.1.5.59 S:F456L (T22928C), ORF1a:S2822P, England, from #1949
XBB.1.5.60 S:M177I, ORF1a:T2106I, S:Q146K, Netherlands/Germany
XBB.1.5.61 T11536C, USA
Expand Down Expand Up @@ -2848,7 +2848,7 @@ XBB.1.5.85 S:L176F, S:478R, Trinidad and Tobago/Hong Kong
XBB.1.5.86 ORF1a:G2868S, Brazil
HA.1 Alias of XBB.1.5.86.1, S:F456L (22930A), Brazil/Canada
HA.2 Alias of XBB.1.5.86.2, S:P521S, Brazil
XBB.1.5.87 S:478R, ORF1a:E1633K, ORF1a:M1588K, C9763T, C20946T, Indonesia
XBB.1.5.87 S:478R, ORF1a:E1633K, ORF1a:M1588K, C9763T, C20946T, pre T17124C, Indonesia
XBB.1.5.88 C2299T, South Africa
XBB.1.5.89 S:478R, S:554A, Canada/Italy/France, from sars-cov-2-variants/lineage-proposals#175
XBB.1.5.90 S:P621S, ORF1ab:S6713L, Belgium/France, from #1849
Expand Down Expand Up @@ -3060,7 +3060,7 @@ XBB.1.9.4 28603T, Europe
XBB.1.9.5 ORF1a:D629E, Russia
XBB.1.9.6 S:403K, S:570T, Indonesia
XBB.1.9.7 S:486P, S:478R, ORF1a:P1018T, Indonesia
XBB.1.10 USA/Japan, S:A852V, S:R403K
XBB.1.10 USA/Japan, S:A852V, S:R403K, pre ORF8:8*
XBB.1.11 Indonesia/Malaysia/Singapore/US, C13968A and G16377A，from #1490
XBB.1.11.1 Indonesia/Malaysia/Singapore, S:S486P，from #1490
FP.1 Alias of XBB.1.11.1.1, A6616G, C21642T, following ORF1a:T2016I, Singapore, from #1847
Expand Down Expand Up @@ -3148,18 +3148,18 @@ FE.1.1.2 Alias of XBB.1.18.1.1.1.2, S:K1086R, Brazil/USA
FE.1.1.3 Alias of XBB.1.18.1.1.1.3, A24775G, China
FE.1.1.4 Alias of XBB.1.18.1.1.1.4, A4336G, T24073C, Brazil
FE.1.2 Alias of XBB.1.18.1.1.2, A5488G
XBB.1.19 Defined by S:486P, C541T, A10042G, T21363C, pre ORF8:8*, Pakistan, from #1680
XBB.1.19 Defined by S:486P, A10042G, T21363C, on C541T, pre ORF8:8* branch, Pakistan, from #1680
XBB.1.19.1 Defined by S:E554K，Pakistan, from #1765
GW.1 Alias of XBB.1.19.1.1, ORF1a:D264N, N:M322V, China, from sars-cov-2-variants/lineage-proposals#157
GW.1.1 Alias of XBB.1.19.1.1.1, S:F456L(T22928C), China/Japan/Singapore, from sars-cov-2-variants/lineage-proposals#355
GW.2 Alias of XBB.1.19.1.2, S:D936G, USA
GW.3 Alias of XBB.1.19.1.3, ORF1a:S100N, ORF1a:N3537S
GW.4 Alias of XBB.1.19.1.4, ORF1a:M3280I
GW.5 Alias of XBB.1.19.1.5, S:K478I, S:L455F, S:F456L(T22928C), Pakistan, from sars-cov-2-variants/lineage-proposals#61, from #2142
GW.5 Alias of XBB.1.19.1.5, S:K478I, S:L455F, S:F456L(T22928C), Pakistan, from #2142
GW.5.1 Alias of XBB.1.19.1.5.1, ORF3a:W149C, Pakistan
GW.5.1.1 Alias of XBB.1.19.1.5.1.1, S:A475V, S:F79S, Pakistan, from #2277
XBB.1.19.2 Defined by S:P521S, Pakistan, from sars-cov-2-variants/lineage-proposals#233
XBB.1.20 Defined by C541T, ORF3a:A72V, ORF1a:P4312T, pre ORF8:8*, Malaysia
XBB.1.20 Defined by ORF3a:A72V, ORF1a:P4312T on C541T, pre ORF8:8* branch, Malaysia
XBB.1.21 Defined by S:486A, ORF1a:K1247R, Turkey, from #1646
XBB.1.22 Defined by S:486P, on 28297C branch, from #1704
XBB.1.22.1 Defined by S:Y200C, from #1704
Expand Down Expand Up @@ -3207,7 +3207,7 @@ XBB.1.31.1 S:E554K, Indonesia, from sars-cov-2-variants/lineage-proposals#141
XBB.1.31.2 ORF1a:A1049V, Indonesia
XBB.1.32 Defined by ORF1a:E148D, Philippines, from #1827
XBB.1.32.1 S:Y453F, ORF1a:L642F, ORF1b:L2497I, Philippines/Thailand, from #1908
XBB.1.33 Defined by S:A376T, found mainly in Italy, from pango-designation issue #1879
XBB.1.33 Defined by S:A376Trev, on ORF1b:L1061I, A27965G, pre ORF8:8* branch, found mainly in Italy, from pango-designation issue #1879
XBB.1.34 S:486P,S:681R, N:A50V, Uganda/Sudan, from pango-designation issue #1621
XBB.1.34.1 S:E554K, ORF1b:P970L
XBB.1.34.2 S:K182I, ORF8:C90F, ORF1a:G989C
Expand Down Expand Up @@ -3238,8 +3238,8 @@ XBB.1.45.1 S:486P, A3139G, A19137G, C28291T, USA/Portugal, from #1937
XBB.1.46 ORF1a:C1114F, Singapore/Malaysia
XBB.1.47 ORF1a:T1761I, ORF1a:C2180Y, ORF1a:I2854V, Philippines/Singapore/Japan
XBB.1.47.1 S:486P, S:A260V, S:V1122G, Japan/USA/Australia/Germany
XBB.1.48 S:L455F, S:F456L (22928C), C2509T, Pakistan, from #1681
XBB.1.49 S:346S, S:486P, on C16648A, A27965G, pre ORF8:8* branch with XBB.1.33, Somalia from sars-cov-2-variants/lineage-proposals#208
XBB.1.48 S:L455F, S:F456L (22928C), C2509T, on C541T, pre ORF8:8* branch, Pakistan, from #1681
XBB.1.49 S:346S, S:486P, on ORF1b:L1061I, A27965G, pre ORF8:8* branch with XBB.1.33, Somalia from sars-cov-2-variants/lineage-proposals#208
XBB.2 Defined by S:D253G, from issue #1173
XBB.2.1 Defined by S:N764R (C23853G), two step mutation on top of C23854A (S:N764K defining of all Omicrons)
XBB.2.2 Defined by S:Q613H
Expand Down

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