Upgrade to hdf5 1.8.18

.travis.yml

@@ -4,7 +4,7 @@
 language: generic
 
 os: osx
-osx_image: beta-xcode6.1
+osx_image: xcode6.4
 
 env:
   global:
@@ -13,19 +13,38 @@ env:
 
 
 before_install:
+    # Fast finish the PR.
+    - |
+      (curl https://raw.githubusercontent.com/conda-forge/conda-forge-build-setup-feedstock/master/recipe/ff_ci_pr_build.py | \
+          python - -v --ci "travis" "${TRAVIS_REPO_SLUG}" "${TRAVIS_BUILD_NUMBER}" "${TRAVIS_PULL_REQUEST}") || exit 1
+
     # Remove homebrew.
-    - brew remove --force $(brew list)
-    - brew cleanup -s
-    - rm -rf $(brew --cache)
+    - |
+      echo ""
+      echo "Removing homebrew from Travis CI to avoid conflicts."
+      curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/uninstall > ~/uninstall_homebrew
+      chmod +x ~/uninstall_homebrew
+      ~/uninstall_homebrew -fq
+      rm ~/uninstall_homebrew
+
 
 install:
+    # Install Miniconda.
     - |
+      echo ""
+      echo "Installing a fresh version of Miniconda."
       MINICONDA_URL="https://repo.continuum.io/miniconda"
       MINICONDA_FILE="Miniconda3-latest-MacOSX-x86_64.sh"
       curl -L -O "${MINICONDA_URL}/${MINICONDA_FILE}"
       bash $MINICONDA_FILE -b
 
+    # Configure conda.
+    - |
+      echo ""
+      echo "Configuring conda."
       source /Users/travis/miniconda3/bin/activate root
+      conda config --remove channels defaults
+      conda config --add channels defaults
       conda config --add channels conda-forge
       conda config --set show_channel_urls true
       conda install --yes --quiet conda-forge-build-setup

LICENSE

@@ -1,5 +1,5 @@
 BSD 3-clause license
-Copyright (c) conda-forge
+Copyright (c) 2015-2017, conda-forge
 All rights reserved.
 
 Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:

ci_support/fast_finish_ci_pr_build.sh

@@ -0,0 +1,4 @@
+#!/bin/bash
+
+curl https://raw.githubusercontent.com/conda-forge/conda-forge-build-setup-feedstock/master/recipe/ff_ci_pr_build.py | \
+     python - -v --ci "circle" "${CIRCLE_PROJECT_USERNAME}/${CIRCLE_PROJECT_REPONAME}" "${CIRCLE_BUILD_NUM}" "${CIRCLE_PR_NUMBER}"

ci_support/run_docker_build.sh

@@ -14,7 +14,7 @@ config=$(cat <<CONDARC
 
 channels:
  - conda-forge
- - defaults # As we need conda-build
+ - defaults
 
 conda-build:
  root-dir: /feedstock_root/build_artefacts
@@ -24,14 +24,30 @@ show_channel_urls: true
 CONDARC
 )
 
+# In order for the conda-build process in the container to write to the mounted
+# volumes, we need to run with the same id as the host machine, which is
+# normally the owner of the mounted volumes, or at least has write permission
+HOST_USER_ID=$(id -u)
+# Check if docker-machine is being used (normally on OSX) and get the uid from
+# the VM
+if hash docker-machine 2> /dev/null && docker-machine active > /dev/null; then
+    HOST_USER_ID=$(docker-machine ssh $(docker-machine active) id -u)
+fi
+
+rm -f "$FEEDSTOCK_ROOT/build_artefacts/conda-forge-build-done"
+
 cat << EOF | docker run -i \
-                        -v ${RECIPE_ROOT}:/recipe_root \
-                        -v ${FEEDSTOCK_ROOT}:/feedstock_root \
+                        -v "${RECIPE_ROOT}":/recipe_root \
+                        -v "${FEEDSTOCK_ROOT}":/feedstock_root \
+                        -e HOST_USER_ID="${HOST_USER_ID}" \
                         -a stdin -a stdout -a stderr \
                         condaforge/linux-anvil \
-                        bash || exit $?
+                        bash || exit 1
 
+set -e
+set +x
 export BINSTAR_TOKEN=${BINSTAR_TOKEN}
+set -x
 export PYTHONUNBUFFERED=1
 
 echo "$config" > ~/.condarc
@@ -44,4 +60,11 @@ source run_conda_forge_build_setup
 # Embarking on 1 case(s).
     conda build /recipe_root --quiet || exit 1
     upload_or_check_non_existence /recipe_root conda-forge --channel=main || exit 1
+touch /feedstock_root/build_artefacts/conda-forge-build-done
 EOF
+
+# double-check that the build got to the end
+# see https://github.com/conda-forge/conda-smithy/pull/337
+# for a possible fix
+set -x
+test -f "$FEEDSTOCK_ROOT/build_artefacts/conda-forge-build-done" || exit 1

circle.yml

@@ -1,5 +1,6 @@
 checkout:
   post:
+    - ./ci_support/fast_finish_ci_pr_build.sh
     - ./ci_support/checkout_merge_commit.sh
 
 machine:

recipe/meta.yaml

@@ -12,21 +12,21 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 1
+  number: 2
   skip: True  # [win]
 
 requirements:
   build:
     - toolchain
-    - gcc  # [osx]
+    - gcc  # [unix]
     - automake
     - libtool
     - mpich
-    - hdf5 1.8.17|1.8.17.*
+    - hdf5 1.8.18|1.8.18.*
   run:
     - libgfortran  # [osx]
     - mpich
-    - hdf5 1.8.17|1.8.17.*
+    - hdf5 1.8.18|1.8.18.*
 
 test:
   commands: