fix(core): respect worktree.enabled: false in dispatchBackgroundWorkflow

.claude/skills/release/SKILL.md

@@ -64,9 +64,15 @@ if [ -f scripts/build-binaries.sh ] && [ -f packages/cli/src/cli.ts ]; then
     packages/cli/src/cli.ts
 
   # Smoke test: the binary must start and exit 0 on a safe, non-interactive command.
-  # `version` or `--help` are both acceptable — pick one that does NOT touch the
-  # network, database, or require env vars.
-  if ! "$TMP_BINARY" version > /tmp/archon-preflight.log 2>&1; then
+  # Use `--help` (NOT `version`). The `version` command's compiled-binary code
+  # path depends on BUNDLED_IS_BINARY=true, which is set by scripts/build-binaries.sh
+  # — but we're doing a bare `bun build --compile` here to keep the smoke fast,
+  # so BUNDLED_IS_BINARY is still `false`. That sends `version` down the dev
+  # branch of version.ts which tries to read package.json from a path that only
+  # exists in node_modules, producing a false-positive ENOENT. `--help` has no
+  # such dev/binary branch and exercises the same module-init graph we're
+  # actually testing. Must NOT touch network, database, or require env vars.
+  if ! "$TMP_BINARY" --help > /tmp/archon-preflight.log 2>&1; then
     echo "ERROR: compiled binary crashed at startup"
     cat /tmp/archon-preflight.log
     echo ""

.claude/skills/test-release/SKILL.md

@@ -79,6 +79,8 @@ About to test:
   Path:     brew (Homebrew tap on macOS)
   Version:  0.3.1 (expected)
   Cleanup:  will uninstall after tests (brew uninstall + untap)
+            If `archon-stable` symlink is detected in Phase 2, it will be
+            restored at the end of Phase 5 by reinstalling the tap formula.
 
 Proceed? (y/N)
 ```
@@ -112,6 +114,18 @@ gh release view v<version> --repo coleam00/Archon --json tagName,assets --jq '{t
 
 If the release does not exist or has no assets, abort with a clear message. Do not proceed to install a non-existent release.
 
+4. **Detect persistent `archon-stable` install (brew path only).** If the user has renamed a prior brew install to `archon-stable` (the dual-homebrew pattern — see `~/.config/fish/functions/brew-upgrade-archon.fish`), Phase 5's `brew uninstall` will wipe it. Capture the state so Phase 5b can restore it:
+
+```bash
+ARCHON_STABLE_WAS_INSTALLED=""
+if [ -L /opt/homebrew/bin/archon-stable ] || [ -L /usr/local/bin/archon-stable ]; then
+  ARCHON_STABLE_WAS_INSTALLED="yes"
+  echo "Detected persistent archon-stable — will restore after Phase 5 uninstall."
+fi
+```
+
+Export `ARCHON_STABLE_WAS_INSTALLED` into the environment used by Phase 5b. Only applies to the `brew` path — `curl-mac` and `curl-vps` don't go through brew and don't disturb `archon-stable`.
+
 ## Phase 3 — Install
 
 ### Path: brew
@@ -352,6 +366,25 @@ archon version | head -1
 # should match the dev version captured in Phase 2
 ```
 
+**Restore `archon-stable` if it existed before the test** (dual-homebrew pattern — see Phase 2 item 4):
+
+```bash
+if [ -n "$ARCHON_STABLE_WAS_INSTALLED" ]; then
+  echo "Restoring archon-stable (detected before test)..."
+  brew tap coleam00/archon
+  brew install coleam00/archon/archon
+  BREW_BIN="$(brew --prefix)/bin"
+  if [ -e "$BREW_BIN/archon" ]; then
+    mv "$BREW_BIN/archon" "$BREW_BIN/archon-stable"
+    echo "archon-stable restored: $(archon-stable version 2>/dev/null | head -1)"
+  else
+    echo "WARNING: brew install succeeded but $BREW_BIN/archon missing — check formula"
+  fi
+fi
+```
+
+> **Note on the restored version**: this reinstalls from whatever the tap currently ships, which is typically the release you just tested (so `archon-stable` ends up at the newly-tested version). That's usually what the operator wants — you just verified the new release works, and you want `archon-stable` pointed at it. If you were testing an older version for back-version QA, the restored `archon-stable` will be the *current* tap formula, not the pre-test version. For that rare case, the operator should re-run `brew-upgrade-archon` manually after the test.
+
 ### Path: curl-mac
 
 ```bash

homebrew/archon.rb

@@ -7,28 +7,28 @@
 class Archon < Formula
   desc "Remote agentic coding platform - control AI assistants from anywhere"
   homepage "https://github.com/coleam00/Archon"
-  version "0.3.6"
+  version "0.3.9"
   license "MIT"
 
   on_macos do
     on_arm do
       url "https://github.com/coleam00/Archon/releases/download/v#{version}/archon-darwin-arm64"
-      sha256 "96b6dac50b046eece9eddbb988a0c39b4f9a0e2faac66e49b977ba6360069e86"
+      sha256 "b617f85a2181938b793b25ad816a9f6b3149d184f64b2e9e2ea2430f27778d64"
     end
     on_intel do
       url "https://github.com/coleam00/Archon/releases/download/v#{version}/archon-darwin-x64"
-      sha256 "09f1dbe12417b4300b7b07b531eb7391a286305f8d4eafc11e7f61f5d26eb8eb"
+      sha256 "5a928af5e0e67ffe084159161a9ea3994a9304cc39bd06132719cd89cc715e86"
     end
   end
 
   on_linux do
     on_arm do
       url "https://github.com/coleam00/Archon/releases/download/v#{version}/archon-linux-arm64"
-      sha256 "80b06a6ff699ec57cd4a3e49cfe7b899a3e8212688d70285f5a887bf10086731"
+      sha256 "567bfca9175e10d9b4fd748e3862bbd34141a234766a7ecf0a714d9c27b8c92e"
     end
     on_intel do
       url "https://github.com/coleam00/Archon/releases/download/v#{version}/archon-linux-x64"
-      sha256 "09f5dac6db8037ed6f3e5b7e9c5eb8e37f19822a4ed2bf4cd7e654780f9d00de"
+      sha256 "c918218df2f0f853d107e6b1727dcd9accc034b183ffbccea93a331d8d376ed8"
     end
   end
 

packages/core/src/orchestrator/orchestrator.ts

@@ -276,8 +276,10 @@ export async function dispatchBackgroundWorkflow(
 
   // 3. Resolve isolation for this worker (each background workflow gets its own worktree).
   // Isolation failure is fatal — never run a workflow in a shared/parent worktree.
+  // However, if the workflow explicitly disables worktrees, skip isolation entirely
+  // and run in the parent's working directory (worktree.enabled: false in YAML).
   let workerCwd: string;
-  if (ctx.codebaseId) {
+  if (ctx.codebaseId && workflow.worktree?.enabled !== false) {
     const codebase = await getCodebase(ctx.codebaseId);
     if (!codebase) {
       throw new Error(
@@ -299,7 +301,8 @@ export async function dispatchBackgroundWorkflow(
       );
     });
   } else {
-    // No codebase — run in parent's cwd (no isolation needed for non-repo workflows)
+    // Either no codebase, or workflow opts out of worktree isolation.
+    // Run in the parent's working directory.
     workerCwd = ctx.cwd;
   }
 

packages/providers/src/claude/binary-resolver.test.ts

@@ -76,7 +76,52 @@ describe('resolveClaudeBinaryPath (binary mode)', () => {
     expect(result).toBe('/env/cli.js');
   });
 
-  test('throws with install instructions when nothing configured', async () => {
+  test('autodetects native installer path when env and config are unset', async () => {
+    const home = process.env.HOME ?? '/Users/test';
+    const expected =
+      process.platform === 'win32'
+        ? `${home}\\.local\\bin\\claude.exe`
+        : `${home}/.local/bin/claude`;
+    // File exists only at the native-installer path.
+    fileExistsSpy = spyOn(resolver, 'fileExists').mockImplementation(
+      (path: string) => path === expected
+    );
+
+    const result = await resolver.resolveClaudeBinaryPath();
+    expect(result).toBe(expected);
+    // Log must mark this as autodetect, not 'env' or 'config' — the source
+    // string is load-bearing for debug triage.
+    expect(mockLogger.info).toHaveBeenCalledWith(
+      { binaryPath: expected, source: 'autodetect' },
+      'claude.binary_resolved'
+    );
+  });
+
+  test('env var takes precedence over autodetect when both would match', async () => {
+    process.env.CLAUDE_BIN_PATH = '/custom/env/claude';
+    fileExistsSpy = spyOn(resolver, 'fileExists').mockReturnValue(true);
+
+    const result = await resolver.resolveClaudeBinaryPath();
+    expect(result).toBe('/custom/env/claude');
+    expect(mockLogger.info).toHaveBeenCalledWith(
+      { binaryPath: '/custom/env/claude', source: 'env' },
+      'claude.binary_resolved'
+    );
+  });
+
+  test('config takes precedence over autodetect when both would match', async () => {
+    fileExistsSpy = spyOn(resolver, 'fileExists').mockReturnValue(true);
+
+    const result = await resolver.resolveClaudeBinaryPath('/custom/config/claude');
+    expect(result).toBe('/custom/config/claude');
+    expect(mockLogger.info).toHaveBeenCalledWith(
+      { binaryPath: '/custom/config/claude', source: 'config' },
+      'claude.binary_resolved'
+    );
+  });
+
+  test('throws with install instructions when nothing is configured and autodetect misses', async () => {
+    // Every probe returns false — env unset, config unset, native path absent.
     fileExistsSpy = spyOn(resolver, 'fileExists').mockReturnValue(false);
 
     const promise = resolver.resolveClaudeBinaryPath();

packages/providers/src/claude/binary-resolver.ts

@@ -9,13 +9,16 @@
  * Resolution order (binary mode only):
  * 1. `CLAUDE_BIN_PATH` environment variable
  * 2. `assistants.claude.claudeBinaryPath` in config
- * 3. Throw with install instructions
+ * 3. Autodetect canonical install path (native installer default)
+ * 4. Throw with install instructions
  *
  * In dev mode (BUNDLED_IS_BINARY=false), returns undefined so the caller
  * omits `pathToClaudeCodeExecutable` entirely and the SDK resolves via its
  * normal node_modules lookup.
  */
 import { existsSync as _existsSync } from 'node:fs';
+import { homedir } from 'node:os';
+import { join } from 'node:path';
 import { BUNDLED_IS_BINARY, createLogger } from '@archon/paths';
 
 /** Wrapper for existsSync — enables spyOn in tests (direct imports can't be spied on). */
@@ -89,6 +92,25 @@ export async function resolveClaudeBinaryPath(
     return configClaudeBinaryPath;
   }
 
-  // 3. Not found — throw with install instructions
+  // 3. Autodetect — the Anthropic native installer
+  // (`curl -fsSL https://claude.ai/install.sh | bash` on macOS/Linux,
+  // `irm https://claude.ai/install.ps1 | iex` on Windows) writes the
+  // executable to a fixed location relative to $HOME. Users who follow
+  // the recommended install path don't need any env var or config entry;
+  // users who deviate (npm global, custom path, etc.) still set one of
+  // the higher-priority sources above.
+  const nativeInstallerPath =
+    process.platform === 'win32'
+      ? join(homedir(), '.local', 'bin', 'claude.exe')
+      : join(homedir(), '.local', 'bin', 'claude');
+  if (fileExists(nativeInstallerPath)) {
+    getLog().info(
+      { binaryPath: nativeInstallerPath, source: 'autodetect' },
+      'claude.binary_resolved'
+    );
+    return nativeInstallerPath;
+  }
+
+  // 4. Not found — throw with install instructions
   throw new Error(INSTALL_INSTRUCTIONS);
 }

packages/providers/src/codex/binary-resolver.test.ts

@@ -87,7 +87,70 @@ describe('resolveCodexBinaryPath (binary mode)', () => {
     expect(normalized).toContain('/tmp/test-archon-home/vendor/codex/');
   });
 
+  test('autodetects npm global install at ~/.npm-global/bin/codex (POSIX)', async () => {
+    if (process.platform === 'win32') return; // POSIX-only probe
+    const home = process.env.HOME ?? '/Users/test';
+    const expected = `${home}/.npm-global/bin/codex`;
+    fileExistsSpy = spyOn(resolver, 'fileExists').mockImplementation(
+      (path: string) => path === expected
+    );
+
+    const result = await resolver.resolveCodexBinaryPath();
+    expect(result).toBe(expected);
+    expect(mockLogger.info).toHaveBeenCalledWith(
+      { binaryPath: expected, source: 'autodetect' },
+      'codex.binary_resolved'
+    );
+  });
+
+  test('autodetects homebrew install on Apple Silicon', async () => {
+    if (process.platform !== 'darwin' || process.arch !== 'arm64') {
+      // `/opt/homebrew/bin/codex` is only probed on darwin-arm64; on other
+      // hosts this test has nothing to assert (the probe list excludes it).
+      return;
+    }
+    fileExistsSpy = spyOn(resolver, 'fileExists').mockImplementation(
+      (path: string) => path === '/opt/homebrew/bin/codex'
+    );
+
+    const result = await resolver.resolveCodexBinaryPath();
+    expect(result).toBe('/opt/homebrew/bin/codex');
+    expect(mockLogger.info).toHaveBeenCalledWith(
+      { binaryPath: '/opt/homebrew/bin/codex', source: 'autodetect' },
+      'codex.binary_resolved'
+    );
+  });
+
+  test('autodetects system install at /usr/local/bin/codex', async () => {
+    if (process.platform === 'win32') {
+      // /usr/local/bin is not probed on Windows.
+      return;
+    }
+    fileExistsSpy = spyOn(resolver, 'fileExists').mockImplementation(
+      (path: string) => path === '/usr/local/bin/codex'
+    );
+
+    const result = await resolver.resolveCodexBinaryPath();
+    expect(result).toBe('/usr/local/bin/codex');
+  });
+
+  test('vendor directory takes precedence over autodetect', async () => {
+    // Both vendor and npm-global would match; vendor must win (lower tier #).
+    fileExistsSpy = spyOn(resolver, 'fileExists').mockImplementation((path: string) => {
+      const normalized = path.replace(/\\/g, '/');
+      return normalized.includes('vendor/codex') || normalized.includes('.npm-global');
+    });
+
+    const result = await resolver.resolveCodexBinaryPath();
+    expect(result!.replace(/\\/g, '/')).toContain('/vendor/codex/');
+    expect(mockLogger.info).toHaveBeenCalledWith(
+      expect.objectContaining({ source: 'vendor' }),
+      'codex.binary_resolved'
+    );
+  });
+
   test('throws with install instructions when binary not found anywhere', async () => {
+    // Env unset, config unset, vendor dir empty, every autodetect path missing.
     fileExistsSpy = spyOn(resolver, 'fileExists').mockReturnValue(false);
 
     await expect(resolver.resolveCodexBinaryPath()).rejects.toThrow('Codex CLI binary not found');

packages/providers/src/codex/binary-resolver.ts

@@ -9,12 +9,14 @@
  * 1. `CODEX_BIN_PATH` environment variable
  * 2. `assistants.codex.codexBinaryPath` in config
  * 3. `~/.archon/vendor/codex/<platform-binary>` (user-placed)
- * 4. Throw with install instructions
+ * 4. Autodetect canonical install paths (npm prefix defaults per platform)
+ * 5. Throw with install instructions
  *
  * In dev mode (BUNDLED_IS_BINARY=false), returns undefined so the SDK
  * uses its normal node_modules-based resolution.
  */
 import { existsSync as _existsSync } from 'node:fs';
+import { homedir } from 'node:os';
 import { join } from 'node:path';
 import { BUNDLED_IS_BINARY, getArchonHome, createLogger } from '@archon/paths';
 
@@ -89,7 +91,19 @@ export async function resolveCodexBinaryPath(
     }
   }
 
-  // 4. Not found — throw with install instructions
+  // 4. Autodetect — probe the handful of paths Codex typically lands at
+  // when installed via the documented package managers. Users who install
+  // somewhere else (custom npm prefix, etc.) still set one of the higher-
+  // priority sources above. Order: most specific → least specific.
+  const autodetectPaths = getAutodetectPaths();
+  for (const probePath of autodetectPaths) {
+    if (fileExists(probePath)) {
+      getLog().info({ binaryPath: probePath, source: 'autodetect' }, 'codex.binary_resolved');
+      return probePath;
+    }
+  }
+
+  // 5. Not found — throw with install instructions
   const vendorPath = `~/.archon/${CODEX_VENDOR_DIR}/`;
   throw new Error(
     'Codex CLI binary not found. The Codex provider requires a native binary\n' +
@@ -105,3 +119,47 @@ export async function resolveCodexBinaryPath(
       '         codexBinaryPath: /path/to/codex\n'
   );
 }
+
+/**
+ * Canonical install locations probed by tier 4 autodetect. Grounded in
+ * the official @openai/codex README and the npm global-install contract
+ * (npm writes the binary to `{npm_prefix}/bin/<name>` on POSIX and
+ * `{npm_prefix}\<name>.cmd` on Windows). The probes cover the npm prefix
+ * a default install lands at on each platform:
+ *
+ *  - `$HOME/.npm-global/bin/codex` — common when the user ran
+ *    `npm config set prefix ~/.npm-global` to avoid root writes
+ *  - `/opt/homebrew/bin/codex` — mac Apple Silicon with homebrew-node
+ *    (homebrew sets npm prefix to /opt/homebrew)
+ *  - `/usr/local/bin/codex` — mac Intel with homebrew-node, or linux
+ *    with system-installed node (npm prefix defaults to /usr/local)
+ *  - `%AppData%\npm\codex.cmd` — Windows npm global default
+ *
+ * Not covered (explicit override required via CODEX_BIN_PATH or config):
+ *   - users with other custom npm prefixes — `npm root -g` would spawn
+ *     a subprocess per resolve, too heavy for a probe helper
+ *   - Homebrew cask install (`brew install --cask codex`) — cask layout
+ *     isn't a PATH binary; users should symlink or set the path
+ *   - manual GitHub Releases extract — placement is user-determined
+ */
+function getAutodetectPaths(): string[] {
+  const paths: string[] = [];
+
+  if (process.platform === 'win32') {
+    const appData = process.env.APPDATA;
+    if (appData) paths.push(join(appData, 'npm', 'codex.cmd'));
+    paths.push(join(homedir(), '.npm-global', 'codex.cmd'));
+    return paths;
+  }
+
+  // POSIX (macOS + Linux)
+  paths.push(join(homedir(), '.npm-global', 'bin', 'codex'));
+
+  if (process.platform === 'darwin' && process.arch === 'arm64') {
+    paths.push('/opt/homebrew/bin/codex');
+  }
+
+  paths.push('/usr/local/bin/codex');
+
+  return paths;
+}