Release 0.1.9.

DESCRIPTION

@@ -1,32 +1,41 @@
 Package: leidenbase
 Type: Package
-Title: R and C wrappers to run the Leiden find_partition function
-Version: 0.1.4
-Authors@R: person( 'Brent', 'Ewing', role = c( 'aut', 'cre' ), email = '[email protected]' )
-Description: An R to C interface that runs the Leiden community
-    detection algorithm to find a basic partition. It runs the
-    equivalent of the find_partition() function, which is
-    given in the Leidenalg distribution file
+Title: R and C/C++ Wrappers to Run the Leiden find_partition() Function
+Authors@R: c( person('Brent', 'Ewing', email = '[email protected]', role = c('aut', 'cre')),
+              person('Vincent', 'Traag', role = 'ctb'),
+              person('Gábor', 'Csárdi', role = 'ctb'),
+              person('Tamás', 'Nepusz', role = 'ctb'),
+              person('Szabolcs', 'Horvat', role = 'ctb'),
+              person('Fabio', 'Zanini', role = 'ctb'))
+Version: 0.1.9
+Description: An R to C/C++ interface that runs the Leiden community
+    detection algorithm to find a basic partition (). It runs the
+    equivalent of the 'leidenalg' find_partition() function, which is
+    given in the 'leidenalg' distribution file
     'leiden/src/functions.py'. This package includes the
-    required source code files from the official Leidenalg
-    distribution and several functions from the R igraph
-    package.  The Leidenalg distribution is available from
-    https://github.com/vtraag/leidenalg
-    and the R igraph package is available from
-    https://igraph.org/r/.
-    The Leiden algorithm is described in the article
-    'From Louvain to Leiden: guaranteeing well-connected communities',
-    V. A. Traag and L. Waltman and N. J. van Eck,
-    Scientific Reports (2019),
-    DOI: 10.1038/s41598-019-41695-z.
-Requires: R (>= 3.0.0)
+    required source code files from the official 'leidenalg'
+    distribution and functions from the R 'igraph'
+    package.  The 'leidenalg' distribution is available from
+    <https://github.com/vtraag/leidenalg/>
+    and the R 'igraph' package is available from
+    <https://igraph.org/r/>.
+    The Leiden algorithm is described in the article by
+    Traag et al. (2019) <doi:10.1038/s41598-019-41695-z>.
 Imports: igraph (>= 0.8.2)
 License: GPL-3
 Encoding: UTF-8
-RoxygenNote: 6.1.1
-Suggests: rmarkdown, knitr, testthat
-VignetteBuilder: knitr
+RoxygenNote: 7.1.2
+Depends: R (>= 3.5.0)
+Suggests: rmarkdown, knitr, testthat (>= 3.1.0)
+URL: https://github.com/cole-trapnell-lab/leidenbase
+BugReports: https://github.com/cole-trapnell-lab/leidenbase/issues
 NeedsCompilation: yes
-Packaged: 2022-01-24 18:04:31 UTC; brent
-Author: Brent Ewing [aut, cre]
 Maintainer: Brent Ewing <[email protected]>
+VignetteBuilder: knitr
+Packaged: 2022-03-09 01:29:46 UTC; brent
+Author: Brent Ewing [aut, cre],
+  Vincent Traag [ctb],
+  Gábor Csárdi [ctb],
+  Tamás Nepusz [ctb],
+  Szabolcs Horvat [ctb],
+  Fabio Zanini [ctb]

NEWS.md

@@ -1,15 +1,17 @@
-# leidenbase 0.1.4
+# leidenbase 0.1.9
+
+* fixes for CRAN submission
+* configure script improvements and fixes
+
 
-### Changes
+# leidenbase 0.1.4
 
 * update leidenalg to most recent code on github
+* update igraph to version 1.2.11
 * test on ARM MacOS
 
 
 # leidenbase 0.1.3
 
-### Changes
-
 * update leidenalg to version 0.8.4.dev4+g0947e63
 * update igraph to version 0.8.5
-

R/leidenbase.R

@@ -103,7 +103,9 @@
 #'   fpath <- system.file( 'testdata', 'igraph_n1500_edgelist.txt.gz', package = 'leidenbase' )
 #'   zfp <- gzfile(fpath)
 #'   igraph <- read_graph( file = zfp, format='edgelist', n=1500 )
-#'   res <- leiden_find_partition(igraph=igraph, partition_type='CPMVertexPartition', resolution_parameter=1e-5)
+#'   res <- leiden_find_partition(igraph=igraph,
+#'                                partition_type='CPMVertexPartition',
+#'                                resolution_parameter=1e-5)
 #'
 #'@useDynLib leidenbase _leiden_find_partition
 #'@import igraph

README.md

@@ -97,7 +97,7 @@ is
 
 ## Issues with leidenbase
 
-For problems with leidenbase, please consider submitting an issue report to the [leidenbase issue page](https://github.com/cole-trapnell-lab/leidenbase/issues) on github.com. We ask that you include some details that may help us with identifying the source of the problem. For problems with installing leidenbase, please see [reporting install issues](doc/issue_report_install.md)  and for problems with running leidenbase, please see [reporting run issues](doc/issue_report_run.md).
+For problems with leidenbase, please consider submitting an issue report to the [leidenbase issue page](https://github.com/cole-trapnell-lab/leidenbase/issues) on github.com. We ask that you include some details that may help us with identifying the source of the problem. For problems with installing leidenbase, please see [reporting install issues](src/doc/issue_report_install.md)  and for problems with running leidenbase, please see [reporting run issues](src/doc/issue_report_run.md).
 
 ## Licenses