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finish c3 containerless operator generation #66

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merged 1 commit into from
Jun 26, 2024
Merged

finish c3 containerless operator generation #66

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25 changes: 21 additions & 4 deletions src/c3/create_containerless_operator.py
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Original file line number Diff line number Diff line change
Expand Up @@ -6,11 +6,12 @@
import re
from c3.create_operator import create_cwl_component
from c3.pythonscript import Pythonscript

from c3.templates import component_setup_code_wo_logging, python_component_setup_code

def create_containerless_operator(
file_path,
version,
skip_logging = False
):

if version is None:
Expand All @@ -32,13 +33,29 @@ def create_containerless_operator(
all_pip_packages_found += (f' {pip_packages}')
logging.info(f'all PIP packages found: {all_pip_packages_found}')


# prepend init code to script
target_code = 'runnable.py'

if os.path.exists(target_code):
os.remove(target_code)

with open(file_path, 'r') as f:
script = f.read()
if skip_logging:
script = component_setup_code_wo_logging + script
else:
script = python_component_setup_code + script
with open(target_code, 'w') as f:
f.write(script)

subprocess.run(';'.join(['rm -Rf claimedenv','python -m venv claimedenv',
'source ./claimedenv/bin/activate',
f'pip install {all_pip_packages_found.strip()}',
'pip list',
f'zip -r claimed-{filename}:{version}.zip {file_path} claimedenv',
'rm -Rf claimedenv']), shell=True)

f'zip -r claimed-{filename}:{version}.zip {target_code} claimedenv',
'rm -Rf claimedenv',
f'rm {target_code}']), shell=True)
script_data = Pythonscript(file_path)
inputs = script_data.get_inputs()
outputs = script_data.get_outputs()
Expand Down