If immunochip summary data can be used for coloc analysis?

[Davidseye]

Immunochip is specifically designed for immune loci, it cover most of genome, but snp is about 10w

[chr1swallace]

Coloc works in short regions of the genome. Immunochip is perfect as long as you are in one of the densely mapped regions, but I wouldn't use outside these. Sent from Outlook for Android<https://aka.ms/AAb9ysg>

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________________________________ From: Davidseye ***@***.***> Sent: Wednesday, November 27, 2024 7:26:33 AM To: chr1swallace/coloc ***@***.***> Cc: Subscribed ***@***.***> Subject: [chr1swallace/coloc] If immunochip summary data can be used for coloc analysis? (Issue #179) Immunochip is specifically designed for immune loci, it cover most of genome, but snp is about 10w — Reply to this email directly, view it on GitHub<#179>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AAQWR2GJMLEJWJUTGAQFHPL2CVX2TAVCNFSM6AAAAABSSEV2ECVHI2DSMVQWIX3LMV43ASLTON2WKOZSGY4TONBTGIZDMNY>. You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

[Davidseye]

thanks a lot！！！( ﹡ˆoˆ﹡ )&nbsp; &nbsp;I will not be cinfused.

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---Original--- From: "Chris ***@***.***&gt; Date: Wed, Nov 27, 2024 18:48 PM To: ***@***.***&gt;; Cc: ***@***.******@***.***&gt;; Subject: Re: [chr1swallace/coloc] If immunochip summary data can be used forcoloc analysis? (Issue #179) Coloc works in short regions of the genome. Immunochip is perfect as long as you are in one of the densely mapped regions, but I wouldn't use outside these. Sent from Outlook for Android<https://aka.ms/AAb9ysg&gt; ________________________________ From: Davidseye ***@***.***&gt; Sent: Wednesday, November 27, 2024 7:26:33 AM To: chr1swallace/coloc ***@***.***&gt; Cc: Subscribed ***@***.***&gt; Subject: [chr1swallace/coloc] If immunochip summary data can be used for coloc analysis? (Issue #179) Immunochip is specifically designed for immune loci, it cover most of genome, but snp is about 10w — Reply to this email directly, view it on GitHub<#179&gt;, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AAQWR2GJMLEJWJUTGAQFHPL2CVX2TAVCNFSM6AAAAABSSEV2ECVHI2DSMVQWIX3LMV43ASLTON2WKOZSGY4TONBTGIZDMNY&gt;. You are receiving this because you are subscribed to this thread.Message ID: ***@***.***&gt; — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you authored the thread.Message ID: ***@***.***&gt;