Merge pull request #1 from chgl/add-ci

added fhir-server and GH actions

.github/ct.yaml

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+helm-extra-args: --timeout 600
+check-version-increment: true
+debug: true

.github/workflows/ci.yaml

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+name: Lint and Test Charts
+
+on:
+  pull_request:
+    paths:
+      - "charts/**"
+
+jobs:
+  lint-chart:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v2
+        with:
+          fetch-depth: 0
+
+      - name: Set up chart-testing
+        uses: helm/[email protected]
+
+      - name: Run chart-testing (list-changed)
+        id: list-changed
+        run: |
+          changed=$(ct list-changed)
+          if [[ -n "$changed" ]]; then
+            echo "::set-output name=changed::true"
+          fi
+
+      - name: Run chart-testing (lint)
+        run: ct lint

.github/workflows/release.yaml

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+name: Release Charts
+
+on:
+  push:
+    branches:
+      - master
+    paths:
+      - "charts/**"
+
+jobs:
+  release:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v2
+
+      - name: Configure Git
+        run: |
+          git config user.name "$GITHUB_ACTOR"
+          git config user.email "[email protected]"
+
+      - name: Run chart-releaser
+        uses: helm/[email protected]
+        env:
+          CR_TOKEN: "${{ secrets.GITHUB_TOKEN }}"

charts/fhir-server/.helmignore

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+# Patterns to ignore when building packages.
+# This supports shell glob matching, relative path matching, and
+# negation (prefixed with !). Only one pattern per line.
+.DS_Store
+# Common VCS dirs
+.git/
+.gitignore
+.bzr/
+.bzrignore
+.hg/
+.hgignore
+.svn/
+# Common backup files
+*.swp
+*.bak
+*.tmp
+*.orig
+*~
+# Various IDEs
+.project
+.idea/
+*.tmproj
+.vscode/

charts/fhir-server/Chart.yaml

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+apiVersion: v2
+name: fhir-server
+description: A Helm chart for deploying the Microsoft FHIR Server for Azure
+maintainers:
+  - name: chgl
+    url: https://github.com/chgl
+
+# A chart can be either an 'application' or a 'library' chart.
+#
+# Application charts are a collection of templates that can be packaged into versioned archives
+# to be deployed.
+#
+# Library charts provide useful utilities or functions for the chart developer. They're included as
+# a dependency of application charts to inject those utilities and functions into the rendering
+# pipeline. Library charts do not define any templates and therefore cannot be deployed.
+type: application
+
+# This is the chart version. This version number should be incremented each time you make changes
+# to the chart and its templates, including the app version.
+version: 0.4.0

charts/fhir-server/templates/NOTES.txt

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+1. Get the application URL by running these commands:
+{{- if .Values.ingress.enabled }}
+{{- range $host := .Values.ingress.hosts }}
+  {{- range .paths }}
+  http{{ if $.Values.ingress.tls }}s{{ end }}://{{ $host.host }}{{ . }}
+  {{- end }}
+{{- end }}
+{{- else if contains "NodePort" .Values.service.type }}
+  export NODE_PORT=$(kubectl get --namespace {{ .Release.Namespace }} -o jsonpath="{.spec.ports[0].nodePort}" services {{ include "fhir-server.fullname" . }})
+  export NODE_IP=$(kubectl get nodes --namespace {{ .Release.Namespace }} -o jsonpath="{.items[0].status.addresses[0].address}")
+  echo http://$NODE_IP:$NODE_PORT
+{{- else if contains "LoadBalancer" .Values.service.type }}
+     NOTE: It may take a few minutes for the LoadBalancer IP to be available.
+           You can watch the status of by running 'kubectl get --namespace {{ .Release.Namespace }} svc -w {{ include "fhir-server.fullname" . }}'
+  export SERVICE_IP=$(kubectl get svc --namespace {{ .Release.Namespace }} {{ include "fhir-server.fullname" . }} --template "{{"{{ range (index .status.loadBalancer.ingress 0) }}{{.}}{{ end }}"}}")
+  echo http://$SERVICE_IP:{{ .Values.service.port }}
+{{- else if contains "ClusterIP" .Values.service.type }}
+  export POD_NAME=$(kubectl get pods --namespace {{ .Release.Namespace }} -l "app.kubernetes.io/name={{ include "fhir-server.name" . }},app.kubernetes.io/instance={{ .Release.Name }}" -o jsonpath="{.items[0].metadata.name}")
+  echo "Visit http://127.0.0.1:8080 to use your application"
+  kubectl --namespace {{ .Release.Namespace }} port-forward $POD_NAME 8080:80
+{{- end }}

charts/fhir-server/templates/_helpers.tpl

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+{{/* vim: set filetype=mustache: */}}
+{{/*
+Expand the name of the chart.
+*/}}
+{{- define "fhir-server.name" -}}
+{{- default .Chart.Name .Values.nameOverride | trunc 63 | trimSuffix "-" -}}
+{{- end -}}
+
+{{/*
+Create a default fully qualified app name.
+We truncate at 63 chars because some Kubernetes name fields are limited to this (by the DNS naming spec).
+If release name contains chart name it will be used as a full name.
+*/}}
+{{- define "fhir-server.fullname" -}}
+{{- if .Values.fullnameOverride -}}
+{{- .Values.fullnameOverride | trunc 63 | trimSuffix "-" -}}
+{{- else -}}
+{{- $name := default .Chart.Name .Values.nameOverride -}}
+{{- if contains $name .Release.Name -}}
+{{- .Release.Name | trunc 63 | trimSuffix "-" -}}
+{{- else -}}
+{{- printf "%s-%s" .Release.Name $name | trunc 63 | trimSuffix "-" -}}
+{{- end -}}
+{{- end -}}
+{{- end -}}
+
+{{/*
+Create chart name and version as used by the chart label.
+*/}}
+{{- define "fhir-server.chart" -}}
+{{- printf "%s-%s" .Chart.Name .Chart.Version | replace "+" "_" | trunc 63 | trimSuffix "-" -}}
+{{- end -}}
+
+{{/*
+Common labels
+*/}}
+{{- define "fhir-server.labels" -}}
+helm.sh/chart: {{ include "fhir-server.chart" . }}
+{{ include "fhir-server.selectorLabels" . }}
+{{- if .Chart.AppVersion }}
+app.kubernetes.io/version: {{ .Chart.AppVersion | quote }}
+{{- end }}
+app.kubernetes.io/managed-by: {{ .Release.Service }}
+{{- end -}}
+
+{{/*
+Selector labels
+*/}}
+{{- define "fhir-server.selectorLabels" -}}
+app.kubernetes.io/name: {{ include "fhir-server.name" . }}
+app.kubernetes.io/instance: {{ .Release.Name }}
+{{- end -}}
+
+{{/*
+Selector labels for MSSQL
+*/}}
+{{- define "fhir-server-mssql.selectorLabels" -}}
+app.kubernetes.io/name: {{ include "fhir-server.name" . }}-mssql
+app.kubernetes.io/instance: {{ .Release.Name }}
+{{- end -}}
+
+{{/*
+Create the name of the service account to use
+*/}}
+{{- define "fhir-server.serviceAccountName" -}}
+{{- if .Values.serviceAccount.create -}}
+    {{ default (include "fhir-server.fullname" .) .Values.serviceAccount.name }}
+{{- else -}}
+    {{ default "default" .Values.serviceAccount.name }}
+{{- end -}}
+{{- end -}}

charts/fhir-server/templates/azureidentity.yaml

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+{{- if .Values.podIdentity.enabled -}}
+apiVersion: "aadpodidentity.k8s.io/v1"
+kind: AzureIdentity
+metadata:
+  name: {{ include "fhir-server.fullname" . }}
+  labels:
+    {{- include "fhir-server.labels" . | nindent 4 }}
+spec:
+  type: 0
+  resourceID: {{ .Values.podIdentity.identityResourceId }}
+  clientID: {{ .Values.podIdentity.identityClientId }}
+{{- end }}

charts/fhir-server/templates/azureidentitybinding.yaml

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+{{- if .Values.podIdentity.enabled -}}
+apiVersion: "aadpodidentity.k8s.io/v1"
+kind: AzureIdentityBinding
+metadata:
+  name: {{ include "fhir-server.fullname" . }}-binding
+spec:
+  azureIdentity: {{ include "fhir-server.fullname" . }}
+  selector: {{ include "fhir-server.fullname" . }}
+{{- end }}

charts/fhir-server/templates/azuresqldatabase.yaml

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+{{- if eq .Values.database.dataStore "SqlServer" }}
+{{- $fullName := include "fhir-server.fullname" . -}}
+apiVersion: azure.microsoft.com/v1beta1
+kind: AzureSqlDatabase
+metadata:
+  name:  {{ $fullName }}
+  labels:
+    {{- include "fhir-server.labels" . | nindent 4 }}
+spec:
+  location: {{ .Values.database.location }}
+  resourceGroup: {{ .Values.database.resourceGroup }}
+  edition: {{ .Values.database.sql.edition }}
+  server:  {{ $fullName }}
+{{- end }}

charts/fhir-server/templates/azuresqlfirewallrule.yaml

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+{{- if eq .Values.database.dataStore "SqlServer" }}
+{{- $fullName := include "fhir-server.fullname" . -}}
+apiVersion: azure.microsoft.com/v1beta1
+kind: AzureSqlFirewallRule
+metadata:
+  name: {{ $fullName }}
+  labels:
+    {{- include "fhir-server.labels" . | nindent 4 }}
+spec:
+  resourceGroup: {{ .Values.database.resourceGroup }}
+  server:  {{ $fullName }}
+
+  # this IP range enables Azure Service access
+  startIpAddress: 0.0.0.0
+  endIpAddress: 0.0.0.0
+{{- end }}

charts/fhir-server/templates/azuresqlserver.yaml

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+{{- if eq .Values.database.dataStore "SqlServer" }}
+{{- $fullName := include "fhir-server.fullname" . -}}
+apiVersion: azure.microsoft.com/v1beta1
+kind: AzureSqlServer
+metadata:
+  name: {{ $fullName }}
+  labels:
+    {{- include "fhir-server.labels" . | nindent 4 }}
+spec:
+  location: {{ .Values.database.location }}
+  resourceGroup: {{ .Values.database.resourceGroup }}
+{{- end }}

charts/fhir-server/templates/cosmosdb.yaml

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+{{- if eq .Values.database.dataStore "CosmosDb" }}
+{{- $fullName := include "fhir-server.fullname" . -}}
+apiVersion: azure.microsoft.com/v1alpha1
+kind: CosmosDB
+metadata:
+  name: {{ $fullName }}
+  labels:
+    {{- include "fhir-server.labels" . | nindent 4 }}
+spec:
+  location: {{ .Values.database.location }}
+  resourceGroup: {{ .Values.database.resourceGroup }}
+  properties:
+    databaseAccountOfferType: Standard
+{{- end }}