Add Discontinuous Galerkin capabilities to the Tracer auxiliary physics#1320

Merged

blaisb merged 81 commits intomasterfrom add_dg_capabilities_tracer

Oct 19, 2024

+3,185-83

Commits on Oct 19, 2024

Some play around with DG
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WIP other strategy using directly face integrals
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WIP
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Crappy version that needs to be cleaned
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WIP getting better now need to fix BCS
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Advection works just fine with tracer now
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WIP Yo
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WIP tracer diffusivity addition
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WIP smthing weird
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WIP more working version
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WIP
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Add a first tracer test with DG
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Add two more tests
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Add copy data correctly
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WIP
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Remove non-necessary elements from the scratch
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Indent and add beta from boundary conditions
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Starting to add interface for assemblers
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Add internal face assembler
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Refactor calculation of RHS
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WIP adding parameter yo
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Linked parameters to assembly

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WIP move workers to assemblers

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Moved boundary assembly to assembler

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Fixed minor mistakes

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Fixed MPI bug

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WIP Add comments

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WIP Add comments

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Removed the set time for the tracer BC in assemblers

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Took the assemblers out of the workers

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Added documentation for parameters

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Clean tests

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Add pipe and sharp initial condition test

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Add support for SharpIB with tracer

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Remove useless reinitialization
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Add new circular advection test case
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Update tests and remove the need for the SIPG cons
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Update last test after merge
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WIP messy
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Things make more sense now
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Update test + SIPG definition now parameterless
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Allow for DG0 by ensuring mapping is at least Q1
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WIP
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Add a test with tracer dynamic mesh adapt
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Remove vector ADD and refactor routines
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Begin refactoring of the assemblers
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Add test with residual value
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WIP refactoring of velocity and properties
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Refactory boundary assembler
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Migrate RHS boundary worker
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Finished refactoring of assemblers
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Refactored and generalized velocity calculation
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Add license to new tests
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Clean documentation
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Fix stabilization documentation
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Remove unused parameter
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Removed unused SIPG parameter
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Remove comments that were not necessary
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Finish removal of unused parameter
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Add comment to clarify statement
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Added more [in,out] statements
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Fix comments for doxygen
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Fix comments
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Simplify assembly routines slightly
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Update include/solvers/tracer_scratch_data.h

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Apply comments by Mikael
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Apply suggestions from code review

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Fix tracer assemblers doxygen
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Make scratch data const in all assemblers
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Add changelog entry
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Update source/solvers/tracer_assemblers.cc

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Update source/solvers/tracer_assemblers.cc

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Update source/solvers/tracer.cc

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Update include/solvers/tracer.h

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Update include/solvers/tracer_scratch_data.h

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Apply suggestions from code review

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Indent
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Address comments by hepap
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Fix variable name
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Indent
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Applied all of review comments
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