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Copy file name to clipboardExpand all lines: NEWS.md
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# PAMES v3.0.0 aka PAMES2
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PAMES has been completely rewritten to work in with our new framework [MiMeSis](https://github.com/cgplab/MIMESIS)
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PAMES has been completely rewritten to work with our new framework [MiMeSis](https://github.com/cgplab/MIMESIS)
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Major changes:
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- all functions now return a data.frame instead of a vector: according to our experience, data.frames works integrate better with pipelines;
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-`get_AUC`replace`compute_AUC` and takes as input a matrix of beta-values as originally produced by Illumina Beadchips (instead of rounded percentages);
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- all functions now return a data.frame instead of a vector: according to our experience, data.frames integrate better with pipelines;
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-`get_AUC`replaces`compute_AUC` and takes as input a matrix of beta-values as originally produced by Illumina Beadchips (instead of rounded percentages);
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-`find_informative_sites` and `find_informative_regions` replace `select_informative_sites` and `select_informative_regions`, respectively, and integrate the new `control_constraints` parameter;
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-`get_purity` replace `compute_purity` and as input a data.frame (generated by `find_informative_sites`/`find_informative_regions`).
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-`get_purity` replace `compute_purity` and takes as input a data.frame (generated by `find_informative_sites`/`find_informative_regions`).
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