Remove the following line from the SampleFunctionApp.csproj file once that workaround is no longer needed.
<_FunctionsSkipCleanOutput>true</_FunctionsSkipCleanOutput>
That project property was added as a workaround related to upgrading the NuGet packages in the solution.
See issue #24 and PR #25.
The _FunctionsSkipCleanOutput project property is not (currently) documented. But it is, "completely safe and will continue to be supported", according to:
Azure/azure-functions-vs-build-sdk#397 (comment)
It is not yet clear when the _FunctionsSkipCleanOutput project property will no longer be needed.