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roll back test input to state of origin/master; add functions to util…
….file to sanitize fasta file IDs fasta ID is sanitized for picard CreateSequenceDictionary to adhere to character set restrictions in SAM/BAM RNAME spec. see: samtools/hts-specs#333 Roll back test input now that we are doing the sanitization. As of this commit, sanitization is only performed on fasta files destined for CreateSequenceDictionary
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test/input/TestBmtaggerDbBuild/expected/TestBmtaggerDbBuild.srprism.imp
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Bundibugyo_ebolavirus_complete_genome | ||
Bundibugyo_ebolavirus_isolate_EboBund-14_2012_complete_genome | ||
Cote_dIvoire_ebolavirus_complete_genome | ||
Reston_ebolavirus_isolate_RESTV/M.fascicularis-tc/PHL-USA/1996/Ferlite_Philippines/Alice_TX_complete_genome | ||
Reston_ebolavirus_isolate_RESTV/Sus-wt/PHL/2009/09A_Farm_A_complete_genome | ||
Reston_ebolavirus_-_Reston_strain_Reston08-C_complete_genome | ||
Reston_ebolavirus_-_Reston_strain_Reston08-E_complete_genome | ||
Reston_Ebola_virus_strain_Pennsylvania_complete_genome | ||
Sudan_ebolavirus_isolate_EboSud-609_2012_complete_genome | ||
Sudan_ebolavirus_isolate_EboSud-639_complete_genome | ||
Sudan_ebolavirus_isolate_EBOV-S-2004_from_Sudan_complete_genome | ||
Sudan_ebolavirus_-_Nakisamata_complete_genome | ||
Sudan_ebolavirus_strain_Gulu_complete_genome | ||
Zaire_ebolavirus_isolate_EBOV/H.sapiens-tc/COD/1977/Bonduni_complete_genome | ||
Zaire_ebolavirus_isolate_EBOV/H.sapiens-tc/COD/2007/43_Luebo_complete_genome | ||
Zaire_ebolavirus_isolate_EBOV/H.sapiens-tc/GAB/1996/1Eko_complete_genome | ||
Zaire_ebolavirus_isolate_EBOV/H.sapiens-tc/GAB/1996/2Nza_complete_genome | ||
Zaire_ebolavirus_isolate_EBOV/H.sapiens-tc/GAB/1996/Ilembe_complete_genome | ||
Zaire_ebolavirus_isolate_H.sapiens-wt/GIN/2014/Gueckedou-C05_complete_genome | ||
Zaire_ebolavirus_strain_Zaire_1995_complete_genome | ||
Bundibugyo_ebolavirus,_complete_genome | ||
Bundibugyo_ebolavirus_isolate_EboBund-14_2012,_complete_genome | ||
Cote_d'Ivoire_ebolavirus,_complete_genome | ||
Reston_ebolavirus_isolate_RESTV/M.fascicularis-tc/PHL-USA/1996/Ferlite,_Philippines/Alice,_TX,_complete_genome | ||
Reston_ebolavirus_isolate_RESTV/Sus-wt/PHL/2009/09A_Farm_A,_complete_genome | ||
Reston_ebolavirus_-_Reston_strain_Reston08-C,_complete_genome | ||
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Sudan_ebolavirus_isolate_EBOV-S-2004_from_Sudan,_complete_genome | ||
Sudan_ebolavirus_-_Nakisamata,_complete_genome | ||
Sudan_ebolavirus_strain_Gulu,_complete_genome | ||
Zaire_ebolavirus_isolate_EBOV/H.sapiens-tc/COD/1977/Bonduni,_complete_genome | ||
Zaire_ebolavirus_isolate_EBOV/H.sapiens-tc/COD/2007/43_Luebo,_complete_genome | ||
Zaire_ebolavirus_isolate_EBOV/H.sapiens-tc/GAB/1996/1Eko,_complete_genome | ||
Zaire_ebolavirus_isolate_EBOV/H.sapiens-tc/GAB/1996/2Nza,_complete_genome | ||
Zaire_ebolavirus_isolate_EBOV/H.sapiens-tc/GAB/1996/Ilembe,_complete_genome | ||
Zaire_ebolavirus_isolate_H.sapiens-wt/GIN/2014/Gueckedou-C05,_complete_genome | ||
Zaire_ebolavirus_strain_Zaire_1995,_complete_genome |
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Bundibugyo_ebolavirus,_complete_genomeBundibugyo_ebolavirus_isolate_EboBund-14_2012,_complete_genomeCote_d'Ivoire_ebolavirus,_complete_genomeReston_ebolavirus_isolate_RESTV/M.fascicularis-tc/PHL-USA/1996/Ferlite,_Philippines/Alice,_TX,_complete_genomeReston_ebolavirus_isolate_RESTV/Sus-wt/PHL/2009/09A_Farm_A,_complete_genomeReston_ebolavirus_-_Reston_strain_Reston08-C,_complete_genomeReston_ebolavirus_-_Reston_strain_Reston08-E,_complete_genomeReston_Ebola_virus_strain_Pennsylvania,_complete_genomeSudan_ebolavirus_isolate_EboSud-609_2012,_complete_genomeSudan_ebolavirus_isolate_EboSud-639,_complete_genomeSudan_ebolavirus_isolate_EBOV-S-2004_from_Sudan,_complete_genomeSudan_ebolavirus_-_Nakisamata,_complete_genomeSudan_ebolavirus_strain_Gulu,_complete_genomeZaire_ebolavirus_isolate_EBOV/H.sapiens-tc/COD/1977/Bonduni,_complete_genomeZaire_ebolavirus_isolate_EBOV/H.sapiens-tc/COD/2007/43_Luebo,_complete_genomeZaire_ebolavirus_isolate_EBOV/H.sapiens-tc/GAB/1996/1Eko,_complete_genomeZaire_ebolavirus_isolate_EBOV/H.sapiens-tc/GAB/1996/2Nza,_complete_genomeZaire_ebolavirus_isolate_EBOV/H.sapiens-tc/GAB/1996/Ilembe,_complete_genomeZaire_ebolavirus_isolate_H.sapiens-wt/GIN/2014/Gueckedou-C05,_complete_genomeZaire_ebolavirus_strain_Zaire_1995,_complete_genome |
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