Fix maxInsertSize for unpaired

broadinstitute · Apr 28, 2016 · 9455176 · 9455176
1 parent 723af9a
commit 9455176
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/main/scala/org/broadinstitute/pilon/BamFile.scala b/src/main/scala/org/broadinstitute/pilon/BamFile.scala
@@ -203,7 +203,7 @@ class BamFile(val bamFile: File, var bamType: Symbol) {
 
   def maxInsertSize = {
     // Returns reasonable max insert size for this bam, either computed or defaulted
-    val maxFromStats = insertStatsFR.maxInsertSize max insertStatsRF.maxInsertSize
+    val maxFromStats = insertStatsFR.maxInsertSize max insertStatsRF.maxInsertSize max insertStatsUnpaired.maxInsertSize
     if (maxFromStats > 0) maxFromStats else BamFile.maxInsertSizes(bamType)
   }