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GCP Batch-friendly Cromwell root detection [VS-1532] (#9069) Build and Test GATK 4 #5077: Pull request #9102 synchronize by mcovarr
February 27, 2025 16:55 4h 50m 43s vs_1597_aou_rwb_google_batch
vs_1597_aou_rwb_google_batch
February 27, 2025 16:55 4h 50m 43s
GCP Batch-friendly Cromwell root detection [VS-1532] (#9069) Build and Test GATK 4 #5076: Pull request #9102 opened by mcovarr
February 26, 2025 21:42 6h 0m 24s vs_1597_aou_rwb_google_batch
vs_1597_aou_rwb_google_batch
February 26, 2025 21:42 6h 0m 24s
BQSR: avoid throwing an error when read group is missing in the recal… Build and Test GATK 4 #5075: Commit 8a032ba pushed by takutosato
February 26, 2025 19:50 44m 25s master
master
February 26, 2025 19:50 44m 25s
Bring in some performance improvements from genomicsdb (#9059) Build and Test GATK 4 #5074: Commit 80f8da3 pushed by lbergelson
February 26, 2025 17:34 51m 46s master
master
February 26, 2025 17:34 51m 46s
BQSR: avoid throwing an error when read group is missing in the recal table, and some refactoring. Build and Test GATK 4 #5073: Pull request #9020 synchronize by takutosato
February 24, 2025 19:03 46m 49s ts_bqsr_read_group
ts_bqsr_read_group
February 24, 2025 19:03 46m 49s
VS-1584 build variants docker on m4 Build and Test GATK 4 #5072: Pull request #9099 synchronize by gbggrant
February 24, 2025 18:06 5h 7m 23s gg_VS-1584_build_variants_docker_on_m4
gg_VS-1584_build_variants_docker_on_m4
February 24, 2025 18:06 5h 7m 23s
VS-1584 build variants docker on m4 Build and Test GATK 4 #5071: Pull request #9099 synchronize by gbggrant
February 24, 2025 17:08 5h 11m 1s gg_VS-1584_build_variants_docker_on_m4
gg_VS-1584_build_variants_docker_on_m4
February 24, 2025 17:08 5h 11m 1s
Add a Pedigree type Build and Test GATK 4 #5070: Pull request #9100 opened by VJalili
February 21, 2025 16:59 43m 19s VJalili:AddCaseSampleToPed
VJalili:AddCaseSampleToPed
February 21, 2025 16:59 43m 19s
VS-1596 Put all references in one structure Build and Test GATK 4 #5069: Pull request #9098 synchronize by gbggrant
February 20, 2025 21:19 4h 34m 29s gg_VS-1596_AllRefsInOneStructure
gg_VS-1596_AllRefsInOneStructure
February 20, 2025 21:19 4h 34m 29s
VS-1596 Put all references in one structure Build and Test GATK 4 #5068: Pull request #9098 synchronize by gbggrant
February 20, 2025 15:04 5h 12m 34s gg_VS-1596_AllRefsInOneStructure
gg_VS-1596_AllRefsInOneStructure
February 20, 2025 15:04 5h 12m 34s
VS-1246 Add more disk and add memory retry handling on SelectVariants task Build and Test GATK 4 #5067: Pull request #9096 synchronize by gbggrant
February 20, 2025 15:01 3h 57m 8s gg_VS-1246_MoreDiskAndBetterMemOnSelectVariants
gg_VS-1246_MoreDiskAndBetterMemOnSelectVariants
February 20, 2025 15:01 3h 57m 8s
VS-1596 Put all references in one structure Build and Test GATK 4 #5066: Pull request #9098 synchronize by gbggrant
February 20, 2025 14:36 6h 0m 27s gg_VS-1596_AllRefsInOneStructure
gg_VS-1596_AllRefsInOneStructure
February 20, 2025 14:36 6h 0m 27s
VS-1584 build variants docker on m4 Build and Test GATK 4 #5065: Pull request #9099 opened by gbggrant
February 19, 2025 12:11 3h 42m 23s gg_VS-1584_build_variants_docker_on_m4
gg_VS-1584_build_variants_docker_on_m4
February 19, 2025 12:11 3h 42m 23s
VS-1596 Put all references in one structure Build and Test GATK 4 #5064: Pull request #9098 synchronize by gbggrant
February 19, 2025 12:10 4h 8m 38s gg_VS-1596_AllRefsInOneStructure
gg_VS-1596_AllRefsInOneStructure
February 19, 2025 12:10 4h 8m 38s
VS-1596 Put all references in one structure Build and Test GATK 4 #5063: Pull request #9098 synchronize by gbggrant
February 18, 2025 18:25 4h 26m 19s gg_VS-1596_AllRefsInOneStructure
gg_VS-1596_AllRefsInOneStructure
February 18, 2025 18:25 4h 26m 19s
VS-1596 Put all references in one structure Build and Test GATK 4 #5062: Pull request #9098 opened by gbggrant
February 18, 2025 18:24 5h 56m 14s gg_VS-1596_AllRefsInOneStructure
gg_VS-1596_AllRefsInOneStructure
February 18, 2025 18:24 5h 56m 14s
VS-1246 Add more disk and add memory retry handling on SelectVariants task Build and Test GATK 4 #5061: Pull request #9096 synchronize by gbggrant
February 18, 2025 16:33 3h 53m 27s gg_VS-1246_MoreDiskAndBetterMemOnSelectVariants
gg_VS-1246_MoreDiskAndBetterMemOnSelectVariants
February 18, 2025 16:33 3h 53m 27s
VS-1246 Add more disk and add memory retry handling on SelectVariants task Build and Test GATK 4 #5060: Pull request #9096 synchronize by gbggrant
February 13, 2025 20:32 4h 39m 29s gg_VS-1246_MoreDiskAndBetterMemOnSelectVariants
gg_VS-1246_MoreDiskAndBetterMemOnSelectVariants
February 13, 2025 20:32 4h 39m 29s
Lots of little changes to Permutect dataset generation (#9094) Build and Test GATK 4 #5059: Commit b0484ad pushed by davidbenjamin
February 13, 2025 19:44 46m 15s master
master
February 13, 2025 19:44 46m 15s
VS-1246 Add more disk and add memory retry handling on SelectVariants task Build and Test GATK 4 #5058: Pull request #9096 synchronize by gbggrant
February 13, 2025 14:18 5h 18m 54s gg_VS-1246_MoreDiskAndBetterMemOnSelectVariants
gg_VS-1246_MoreDiskAndBetterMemOnSelectVariants
February 13, 2025 14:18 5h 18m 54s
VS-1246 Add more disk and add memory retry handling on SelectVariants task Build and Test GATK 4 #5057: Pull request #9096 synchronize by gbggrant
February 13, 2025 14:17 4h 47m 47s gg_VS-1246_MoreDiskAndBetterMemOnSelectVariants
gg_VS-1246_MoreDiskAndBetterMemOnSelectVariants
February 13, 2025 14:17 4h 47m 47s
VS-1246 Add more disk and add memory retry handling on SelectVariants task Build and Test GATK 4 #5056: Pull request #9096 synchronize by gbggrant
February 13, 2025 00:55 4h 11m 18s gg_VS-1246_MoreDiskAndBetterMemOnSelectVariants
gg_VS-1246_MoreDiskAndBetterMemOnSelectVariants
February 13, 2025 00:55 4h 11m 18s
VS-1246 Add more disk and add memory retry handling on SelectVariants task Build and Test GATK 4 #5055: Pull request #9096 opened by gbggrant
February 12, 2025 16:38 4h 8m 51s gg_VS-1246_MoreDiskAndBetterMemOnSelectVariants
gg_VS-1246_MoreDiskAndBetterMemOnSelectVariants
February 12, 2025 16:38 4h 8m 51s
BQSR: avoid throwing an error when read group is missing in the recal table, and some refactoring. Build and Test GATK 4 #5054: Pull request #9020 synchronize by takutosato
February 11, 2025 17:59 44m 44s ts_bqsr_read_group
ts_bqsr_read_group
February 11, 2025 17:59 44m 44s
BQSR: avoid throwing an error when read group is missing in the recal table, and some refactoring. Build and Test GATK 4 #5053: Pull request #9020 synchronize by takutosato
February 11, 2025 17:34 45m 38s ts_bqsr_read_group
ts_bqsr_read_group
February 11, 2025 17:34 45m 38s