closes #48

brentp · Sep 3, 2019 · 3cef0aa · 3cef0aa
1 parent 98d31d7
commit 3cef0aa
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diff --git a/CHANGES.md b/CHANGES.md
@@ -2,6 +2,7 @@ v0.2.21 (dev)
 =======
 + hts/vcf allow setting id.
 + hts/vcf flush stdout on close.
++ hts/bam correct check for EOF (#48)
 
 v0.2.20
 =======

diff --git a/src/hts/bam.nim b/src/hts/bam.nim
@@ -345,7 +345,7 @@ proc open*(bam: var Bam, path: cstring, threads: int=0, mode:string="r", fai: cs
   if mode[0] == 'r' and 0 != threads and 0 != hts_set_threads(hts, cint(threads)):
       raise newException(ValueError, "error setting number of threads")
 
-  if mode[0] == 'r' and bam.hts.format.format != hts_concat.sam and hts_check_EOF(hts) != 1:
+  if mode[0] == 'r' and hts_check_EOF(hts) < 1:
     raise newException(ValueError, "invalid bgzf file")
 
   if mode[0] == 'w':
-Original file line number
+Diff line change
@@ Expand Up / @@ -2,6 +2,7 @@ v0.2.21 (dev) @@
     =======
     + hts/vcf allow setting id.
     + hts/vcf flush stdout on close.
+    + hts/bam correct check for EOF (#48)
     v0.2.20
     =======
@@ Expand Down @@