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brainglobe / brainglobe-workflows Public

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Run cellfinder benchmarks on small data#94

Merged

sfmig merged 18 commits intomainbrainglobe/brainglobe-workflows:mainfrom

smg/cellfinder-benchmarks-smallbrainglobe/brainglobe-workflows:smg/cellfinder-benchmarks-smallCopy head branch name to clipboard

Apr 30, 2024

Conversation Commits18 (18)Checks Files changed

Merged

Run cellfinder benchmarks on small data#94
sfmig merged 18 commits intomainfrom
smg/cellfinder-benchmarks-small

Commits

Commits on Apr 30, 2024

update asv config
sfmig
committed
remove GIN download from setup_cache (it's done in CellfinderConfig now)
sfmig
committed
fix manifest
sfmig
committed
attempt to omit coverage of benchmarks
sfmig
committed
add cellfinder model download to setup_cache
sfmig
committed
rename benchmarks
sfmig
committed
remove cellfinder-core from asv dependencies
sfmig
committed
update script to reflect current status
sfmig
committed
fix asv project path
sfmig
committed
cosmetic changes to readme
sfmig
committed
add environment variable to point to a local path
sfmig
committed
update readme for env variable option
sfmig
committed
point to tip of locally checked out branch by default
sfmig
committed
update readme
sfmig
committed
remove pooch from asv and dev dependencies
sfmig
committed
exclude html and put excludes together
sfmig
committed
Update benchmarks/cellfinder_core.py

sfmig
and
alessandrofelder
committed
fix ruff
sfmig
committed

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