Skip to content

Navigation Menu

Appearance settings

View all features
- BY COMPANY SIZE
  Enterprises
  Small and medium teams
  Startups
  Nonprofits
- BY USE CASE
  App Modernization
  DevSecOps
  DevOps
  CI/CD
  View all use cases
- BY INDUSTRY
  Healthcare
  Financial services
  Manufacturing
  Government
  View all industries
View all solutions
- EXPLORE BY TOPIC
  AI
  Software Development
  DevOps
  Security
  View all topics
- EXPLORE BY TYPE
  Customer stories
  Events & webinars
  Ebooks & reports
  Business insights
  GitHub Skills
- SUPPORT & SERVICES
  Documentation
  Customer support
  Community forum
  Trust center
  Partners
View all resources
- COMMUNITY
  GitHub SponsorsFund open source developers
- PROGRAMS
  Security Lab
  Maintainer Community
  Accelerator
  GitHub Stars
  Archive Program
- REPOSITORIES
  Topics
  Trending
  Collections
- ENTERPRISE SOLUTIONS
  Enterprise platformAI-powered developer platform
- AVAILABLE ADD-ONS
  GitHub Advanced SecurityEnterprise-grade security features
  Copilot for BusinessEnterprise-grade AI features
  Premium SupportEnterprise-grade 24/7 support
Pricing

Search code, repositories, users, issues, pull requests...

Search

Clear

Search syntax tips

Provide feedback

We read every piece of feedback, and take your input very seriously.

Include my email address so I can be contacted

Saved searches

Use saved searches to filter your results more quickly

Name

Query

To see all available qualifiers, see our documentation.

Appearance settings

You signed in with another tab or window. Reload to refresh your session. You signed out in another tab or window. Reload to refresh your session. You switched accounts on another tab or window. Reload to refresh your session.

Dismiss alert

brainglobe / brainglobe-workflows Public

Notifications You must be signed in to change notification settings
Fork 9
Star 12

Code
Issues 30
Pull requests
Actions
Projects
Security and quality
Insights

Additional navigation options

Code
Issues
Pull requests
Actions
Projects
Security and quality
Insights

Workflow tests caching#62

Merged

alessandrofelder merged 43 commits intomainbrainglobe/brainglobe-workflows:mainfrom

smg/workflow-tests-cachingbrainglobe/brainglobe-workflows:smg/workflow-tests-cachingCopy head branch name to clipboard

Jan 11, 2024

Conversation Commits43 (43)Checks Files changed

Merged

Workflow tests caching#62
alessandrofelder merged 43 commits intomainfrom
smg/workflow-tests-caching

Commits

Commits on Dec 22, 2023

pass all parameters to cellfinder_run
sfmig
committed
changed required, optional and internal fields. read_config passes. add method to config class (WIP)
sfmig
committed
add signal and background data from local
sfmig
committed
add missing data config fixtures
sfmig
committed
mark GIN download data test as slow
sfmig
committed
refactor config class methods and remove setup_workflow
sfmig
committed
tests pass with default config
sfmig
committed
remove unused fixtures
sfmig
committed
update entry point
sfmig
committed

Commits on Jan 9, 2024

Merge branch 'main' into smg/cellfinder-config
sfmig
committed
change cellfinder-core to cellfinder in pyproject
sfmig
committed
update cellfinder to cellfinder_core
sfmig
committed
renaming cellfinder script workflow to cellfinder_core. fix entrypoint test.
sfmig
committed
docstrings for class config
sfmig
committed
fix entry point
sfmig
committed
skip add input paths test
sfmig
committed

Commits on Jan 10, 2024

split tests with and without CLI inputs
sfmig
committed
all tests passing with default config
sfmig
committed
all tests passing with default option
sfmig
committed
make all paths input strings. move methods to class. make some fixtures dict. simplify other fixtures
sfmig
committed
refactor setup_workflow
sfmig
committed
cosmetic changes to fixtures
sfmig
committed
remove spurious monkeypatched cwd from merge
sfmig
committed
add skips that were removed in merge
sfmig
committed
move fixtures to code where they are used
sfmig
committed
bring back default_input_config_cellfinder fixture
sfmig
committed
finalise adding local config as parameter in test_read_cellfinder_config
sfmig
committed
add local config to remaining unit tests
sfmig
committed
add local config and GIN config to test main
sfmig
committed
monkeypatched home in integration tests (only works in main)
sfmig
committed
skip tests that use subprocess for now
sfmig
committed
monkeypatch pooch.retrieve when forcing download
sfmig
committed
make config local fixture copy downloaded GIN data (rather than re-download again)
sfmig
committed
fix output dir definition
sfmig
committed
docstrings and remove merge artifact
sfmig
committed
fill in docstrings
sfmig
committed
add GIN default location as a fixture
sfmig
committed
remove commented out GIN default location
sfmig
committed
remove tests for running script (monkeypatched home function not passed to subprocess, and all subsequent steps already tested)
sfmig
committed
replace entry point test for smoketest
sfmig
committed
fixes from rebase
sfmig
committed
fix ruff
sfmig
committed
Merge branch 'main' into smg/workflow-tests-caching
sfmig
committed

Footer

© 2026 GitHub, Inc.

Footer navigation

Terms
Privacy
Security
Status
Community
Docs
Contact

You can’t perform that action at this time.