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Cellfinder workflow tests#20

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sfmig wants to merge 53 commits intomainfrom
smg/cellfinder-workflow-tests
Closed

Cellfinder workflow tests#20
sfmig wants to merge 53 commits intomainfrom
smg/cellfinder-workflow-tests

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@sfmig
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@sfmig sfmig commented Oct 2, 2023

A first approach to defining tests for the cellfinder workflow.

We eventually didn't pursue the environment variable approach to define the input config, so closing this PR for now. The workflow with tests is now part of PR #23

@sfmig sfmig mentioned this pull request Oct 2, 2023
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codecov bot commented Oct 4, 2023

Codecov Report

Attention: 12 lines in your changes are missing coverage. Please review.

Comparison is base (8665e74) 0.00% compared to head (3af3b8a) 88.23%.
Report is 3 commits behind head on main.

Additional details and impacted files
@@            Coverage Diff             @@
##            main      #20       +/-   ##
==========================================
+ Coverage   0.00%   88.23%   +88.23%     
==========================================
  Files          1        2        +1     
  Lines          5      102       +97     
==========================================
+ Hits           0       90       +90     
- Misses         5       12        +7     
Files Coverage Δ
brainglobe_workflows/__init__.py 60.00% <60.00%> (ø)
brainglobe_workflows/cellfinder/cellfinder_main.py 89.69% <89.69%> (ø)

... and 1 file with indirect coverage changes

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