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Following the github instructions I get the following error installing the matlab toolbox at the 100% mark.
Steps to reproduce
Follow github instructions:
#!bash
mkdir build
cd build
cmake -DCMAKE_PREFIX_PATH=/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/boost_1_87_0 -DCMAKE_INSTALL_PREFIX=/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam_install -DGTSAM_INSTALL_MATLAB_TOOLBOX=ON ..
make check (optional, runs unit tests)
make install
make intstall - Error:
[100%] Generating ../wrap/gtsam/gtsam_wrapper.cpp
[MatlabWrapper] Ignoring classes: ['gtsam::Point2', 'gtsam::Point3', 'gtsam::CustomFactor']
[100%] Building CXX object matlab/CMakeFiles/gtsam_matlab_wrapper.dir/__/wrap/gtsam/gtsam_wrapper.cpp.o
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/build/wrap/gtsam/gtsam_wrapper.cpp: In function ‘void gtsamDiscreteSearch_FromFactorGraph_1013(int, mxArray**, int, const mxArray**)’:
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/build/wrap/gtsam/gtsam_wrapper.cpp:15444:45: error: ‘DiscreteSearch’ was not declared in this scope; did you mean ‘gtsam::DiscreteSearch’?
15444 | out[0] = wrap_shared_ptr(std::make_shared<DiscreteSearch>(gtsam::DiscreteSearch::FromFactorGraph(factorGraph,ordering,buildJunctionTree)),"DiscreteSearch", false);
| ^~~~~~~~~~~~~~
| gtsam::DiscreteSearch
In file included from /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/build/wrap/gtsam/gtsam_wrapper.cpp:31:
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DiscreteSearch.h:44:20: note: ‘gtsam::DiscreteSearch’ declared here
44 | class GTSAM_EXPORT DiscreteSearch {
| ^~~~~~~~~~~~~~
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/build/wrap/gtsam/gtsam_wrapper.cpp:15444:139: error: no matching function for call to ‘make_shared<<expression error> >(gtsam::DiscreteSearch)’
15444 | hared<DiscreteSearch>(gtsam::DiscreteSearch::FromFactorGraph(factorGraph,ordering,buildJunctionTree)),"DiscreteSearch", false);
| ^
In file included from /usr/include/c++/9/memory:81,
from /usr/include/tbb/tbb_stddef.h:452,
from /usr/include/tbb/scalable_allocator.h:204,
from /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/base/types.h:31,
from /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/global_includes.h:22,
from /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/base/Vector.h:29,
from /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/wrap/matlab.h:25,
from /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/build/wrap/gtsam/gtsam_wrapper.cpp:1:
/usr/include/c++/9/bits/shared_ptr.h:714:5: note: candidate: ‘template<class _Tp, class ... _Args> std::shared_ptr<_Tp> std::make_shared(_Args&& ...)’
714 | make_shared(_Args&&... __args)
| ^~~~~~~~~~~
/usr/include/c++/9/bits/shared_ptr.h:714:5: note: template argument deduction/substitution failed:
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/build/wrap/gtsam/gtsam_wrapper.cpp:15444:139: error: template argument 1 is invalid
15444 | hared<DiscreteSearch>(gtsam::DiscreteSearch::FromFactorGraph(factorGraph,ordering,buildJunctionTree)),"DiscreteSearch", false);
| ^
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/build/wrap/gtsam/gtsam_wrapper.cpp: In function ‘void gtsamDiscreteSearch_FromFactorGraph_1014(int, mxArray**, int, const mxArray**)’:
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/build/wrap/gtsam/gtsam_wrapper.cpp:15452:45: error: ‘DiscreteSearch’ was not declared in this scope; did you mean ‘gtsam::DiscreteSearch’?
15452 | out[0] = wrap_shared_ptr(std::make_shared<DiscreteSearch>(gtsam::DiscreteSearch::FromFactorGraph(factorGraph,ordering,false)),"DiscreteSearch", false);
| ^~~~~~~~~~~~~~
| gtsam::DiscreteSearch
In file included from /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/build/wrap/gtsam/gtsam_wrapper.cpp:31:
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DiscreteSearch.h:44:20: note: ‘gtsam::DiscreteSearch’ declared here
44 | class GTSAM_EXPORT DiscreteSearch {
| ^~~~~~~~~~~~~~
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/build/wrap/gtsam/gtsam_wrapper.cpp:15452:127: error: no matching function for call to ‘make_shared<<expression error> >(gtsam::DiscreteSearch)’
15452 | (std::make_shared<DiscreteSearch>(gtsam::DiscreteSearch::FromFactorGraph(factorGraph,ordering,false)),"DiscreteSearch", false);
| ^
In file included from /usr/include/c++/9/memory:81,
from /usr/include/tbb/tbb_stddef.h:452,
from /usr/include/tbb/scalable_allocator.h:204,
from /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/base/types.h:31,
from /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/global_includes.h:22,
from /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/base/Vector.h:29,
from /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/wrap/matlab.h:25,
from /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/build/wrap/gtsam/gtsam_wrapper.cpp:1:
/usr/include/c++/9/bits/shared_ptr.h:714:5: note: candidate: ‘template<class _Tp, class ... _Args> std::shared_ptr<_Tp> std::make_shared(_Args&& ...)’
714 | make_shared(_Args&&... __args)
| ^~~~~~~~~~~
/usr/include/c++/9/bits/shared_ptr.h:714:5: note: template argument deduction/substitution failed:
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/build/wrap/gtsam/gtsam_wrapper.cpp:15452:127: error: template argument 1 is invalid
15452 | (std::make_shared<DiscreteSearch>(gtsam::DiscreteSearch::FromFactorGraph(factorGraph,ordering,false)),"DiscreteSearch", false);
| ^
In file included from /usr/include/x86_64-linux-gnu/c++/9/bits/c++allocator.h:33,
from /usr/include/c++/9/bits/allocator.h:46,
from /usr/include/c++/9/string:41,
from /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/base/types.h:28,
from /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/global_includes.h:22,
from /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/base/Vector.h:29,
from /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/wrap/matlab.h:25,
from /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/build/wrap/gtsam/gtsam_wrapper.cpp:1:
/usr/include/c++/9/ext/new_allocator.h: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = gtsam::DiscreteConditional; _Args = {std::shared_ptr<gtsam::DiscreteConditional>}; _Tp = gtsam::DiscreteConditional]’:
/usr/include/c++/9/bits/alloc_traits.h:483:4: required from ‘static void std::allocator_traits<std::allocator<_CharT> >::construct(std::allocator_traits<std::allocator<_CharT> >::allocator_type&, _Up*, _Args&& ...) [with _Up = gtsam::DiscreteConditional; _Args = {std::shared_ptr<gtsam::DiscreteConditional>}; _Tp = gtsam::DiscreteConditional; std::allocator_traits<std::allocator<_CharT> >::allocator_type = std::allocator<gtsam::DiscreteConditional>]’
/usr/include/c++/9/bits/shared_ptr_base.h:548:39: required from ‘std::_Sp_counted_ptr_inplace<_Tp, _Alloc, _Lp>::_Sp_counted_ptr_inplace(_Alloc, _Args&& ...) [with _Args = {std::shared_ptr<gtsam::DiscreteConditional>}; _Tp = gtsam::DiscreteConditional; _Alloc = std::allocator<gtsam::DiscreteConditional>; __gnu_cxx::_Lock_policy _Lp = __gnu_cxx::_S_atomic]’
/usr/include/c++/9/bits/shared_ptr_base.h:679:16: required from ‘std::__shared_count<_Lp>::__shared_count(_Tp*&, std::_Sp_alloc_shared_tag<_Alloc>, _Args&& ...) [with _Tp = gtsam::DiscreteConditional; _Alloc = std::allocator<gtsam::DiscreteConditional>; _Args = {std::shared_ptr<gtsam::DiscreteConditional>}; __gnu_cxx::_Lock_policy _Lp = __gnu_cxx::_S_atomic]’
/usr/include/c++/9/bits/shared_ptr_base.h:1344:71: required from ‘std::__shared_ptr<_Tp, _Lp>::__shared_ptr(std::_Sp_alloc_shared_tag<_Tp>, _Args&& ...) [with _Alloc = std::allocator<gtsam::DiscreteConditional>; _Args = {std::shared_ptr<gtsam::DiscreteConditional>}; _Tp = gtsam::DiscreteConditional; __gnu_cxx::_Lock_policy _Lp = __gnu_cxx::_S_atomic]’
/usr/include/c++/9/bits/shared_ptr.h:359:59: required from ‘std::shared_ptr<_Tp>::shared_ptr(std::_Sp_alloc_shared_tag<_Tp>, _Args&& ...) [with _Alloc = std::allocator<gtsam::DiscreteConditional>; _Args = {std::shared_ptr<gtsam::DiscreteConditional>}; _Tp = gtsam::DiscreteConditional]’
/usr/include/c++/9/bits/shared_ptr.h:701:14: required from ‘std::shared_ptr<_Tp> std::allocate_shared(const _Alloc&, _Args&& ...) [with _Tp = gtsam::DiscreteConditional; _Alloc = std::allocator<gtsam::DiscreteConditional>; _Args = {std::shared_ptr<gtsam::DiscreteConditional>}]’
/usr/include/c++/9/bits/shared_ptr.h:717:39: required from ‘std::shared_ptr<_Tp> std::make_shared(_Args&& ...) [with _Tp = gtsam::DiscreteConditional; _Args = {std::shared_ptr<gtsam::DiscreteConditional>}]’
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/build/wrap/gtsam/gtsam_wrapper.cpp:14278:97: required from here
/usr/include/c++/9/ext/new_allocator.h:146:4: error: no matching function for call to ‘gtsam::DiscreteConditional::DiscreteConditional(std::shared_ptr<gtsam::DiscreteConditional>)’
146 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DiscreteBayesNet.h:21,
from /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/build/wrap/gtsam/gtsam_wrapper.cpp:20:
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DiscreteConditional.h:121:3: note: candidate: ‘gtsam::DiscreteConditional::DiscreteConditional(const gtsam::DecisionTreeFactor&, const gtsam::DecisionTreeFactor&, const gtsam::Ordering&)’
121 | DiscreteConditional(const DecisionTreeFactor& joint,
| ^~~~~~~~~~~~~~~~~~~
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DiscreteConditional.h:121:3: note: candidate expects 3 arguments, 1 provided
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DiscreteConditional.h:113:3: note: candidate: ‘gtsam::DiscreteConditional::DiscreteConditional(const gtsam::DecisionTreeFactor&, const gtsam::DecisionTreeFactor&)’
113 | DiscreteConditional(const DecisionTreeFactor& joint,
| ^~~~~~~~~~~~~~~~~~~
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DiscreteConditional.h:113:3: note: candidate expects 2 arguments, 1 provided
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DiscreteConditional.h:106:3: note: candidate: ‘gtsam::DiscreteConditional::DiscreteConditional(const DiscreteKey&, const string&)’
106 | DiscreteConditional(const DiscreteKey& key, const std::string& spec)
| ^~~~~~~~~~~~~~~~~~~
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DiscreteConditional.h:106:3: note: candidate expects 2 arguments, 1 provided
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DiscreteConditional.h:101:3: note: candidate: ‘gtsam::DiscreteConditional::DiscreteConditional(const DiscreteKey&, const gtsam::DiscreteKeys&, const string&)’
101 | DiscreteConditional(const DiscreteKey& key, const DiscreteKeys& parents,
| ^~~~~~~~~~~~~~~~~~~
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DiscreteConditional.h:101:3: note: candidate expects 3 arguments, 1 provided
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DiscreteConditional.h:87:3: note: candidate: ‘gtsam::DiscreteConditional::DiscreteConditional(const DiscreteKey&, const gtsam::DiscreteKeys&, const std::vector<double>&)’
87 | DiscreteConditional(const DiscreteKey& key, const DiscreteKeys& parents,
| ^~~~~~~~~~~~~~~~~~~
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DiscreteConditional.h:87:3: note: candidate expects 3 arguments, 1 provided
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DiscreteConditional.h:76:3: note: candidate: ‘gtsam::DiscreteConditional::DiscreteConditional(const DiscreteKey&, const gtsam::DiscreteKeys&, const Table&)’
76 | DiscreteConditional(const DiscreteKey& key, const DiscreteKeys& parents,
| ^~~~~~~~~~~~~~~~~~~
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DiscreteConditional.h:76:3: note: candidate expects 3 arguments, 1 provided
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DiscreteConditional.h:67:12: note: candidate: ‘gtsam::DiscreteConditional::DiscreteConditional(const gtsam::Signature&)’
67 | explicit DiscreteConditional(const Signature& signature);
| ^~~~~~~~~~~~~~~~~~~
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DiscreteConditional.h:67:49: note: no known conversion for argument 1 from ‘std::shared_ptr<gtsam::DiscreteConditional>’ to ‘const gtsam::Signature&’
67 | explicit DiscreteConditional(const Signature& signature);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DiscreteConditional.h:63:3: note: candidate: ‘gtsam::DiscreteConditional::DiscreteConditional(size_t, const gtsam::DiscreteKeys&, const ADT&)’
63 | DiscreteConditional(size_t nFrontals, const DiscreteKeys& keys,
| ^~~~~~~~~~~~~~~~~~~
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DiscreteConditional.h:63:3: note: candidate expects 3 arguments, 1 provided
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DiscreteConditional.h:57:3: note: candidate: ‘gtsam::DiscreteConditional::DiscreteConditional(size_t, const gtsam::DiscreteFactor&)’
57 | DiscreteConditional(size_t nFrontals, const DiscreteFactor& f);
| ^~~~~~~~~~~~~~~~~~~
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DiscreteConditional.h:57:3: note: candidate expects 2 arguments, 1 provided
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DiscreteConditional.h:54:3: note: candidate: ‘gtsam::DiscreteConditional::DiscreteConditional()’
54 | DiscreteConditional() {}
| ^~~~~~~~~~~~~~~~~~~
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DiscreteConditional.h:54:3: note: candidate expects 0 arguments, 1 provided
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DiscreteConditional.h:37:20: note: candidate: ‘gtsam::DiscreteConditional::DiscreteConditional(const gtsam::DiscreteConditional&)’
37 | class GTSAM_EXPORT DiscreteConditional
| ^~~~~~~~~~~~~~~~~~~
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DiscreteConditional.h:37:20: note: no known conversion for argument 1 from ‘std::shared_ptr<gtsam::DiscreteConditional>’ to ‘const gtsam::DiscreteConditional&’
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DiscreteConditional.h:37:20: note: candidate: ‘gtsam::DiscreteConditional::DiscreteConditional(gtsam::DiscreteConditional&&)’
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DiscreteConditional.h:37:20: note: no known conversion for argument 1 from ‘std::shared_ptr<gtsam::DiscreteConditional>’ to ‘gtsam::DiscreteConditional&&’
In file included from /usr/include/x86_64-linux-gnu/c++/9/bits/c++allocator.h:33,
from /usr/include/c++/9/bits/allocator.h:46,
from /usr/include/c++/9/string:41,
from /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/base/types.h:28,
from /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/global_includes.h:22,
from /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/base/Vector.h:29,
from /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/wrap/matlab.h:25,
from /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/build/wrap/gtsam/gtsam_wrapper.cpp:1:
/usr/include/c++/9/ext/new_allocator.h: In instantiation of ‘void __gnu_cxx::new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = gtsam::DecisionTreeFactor; _Args = {std::shared_ptr<gtsam::DiscreteFactor>}; _Tp = gtsam::DecisionTreeFactor]’:
/usr/include/c++/9/bits/alloc_traits.h:483:4: required from ‘static void std::allocator_traits<std::allocator<_CharT> >::construct(std::allocator_traits<std::allocator<_CharT> >::allocator_type&, _Up*, _Args&& ...) [with _Up = gtsam::DecisionTreeFactor; _Args = {std::shared_ptr<gtsam::DiscreteFactor>}; _Tp = gtsam::DecisionTreeFactor; std::allocator_traits<std::allocator<_CharT> >::allocator_type = std::allocator<gtsam::DecisionTreeFactor>]’
/usr/include/c++/9/bits/shared_ptr_base.h:548:39: required from ‘std::_Sp_counted_ptr_inplace<_Tp, _Alloc, _Lp>::_Sp_counted_ptr_inplace(_Alloc, _Args&& ...) [with _Args = {std::shared_ptr<gtsam::DiscreteFactor>}; _Tp = gtsam::DecisionTreeFactor; _Alloc = std::allocator<gtsam::DecisionTreeFactor>; __gnu_cxx::_Lock_policy _Lp = __gnu_cxx::_S_atomic]’
/usr/include/c++/9/bits/shared_ptr_base.h:679:16: required from ‘std::__shared_count<_Lp>::__shared_count(_Tp*&, std::_Sp_alloc_shared_tag<_Alloc>, _Args&& ...) [with _Tp = gtsam::DecisionTreeFactor; _Alloc = std::allocator<gtsam::DecisionTreeFactor>; _Args = {std::shared_ptr<gtsam::DiscreteFactor>}; __gnu_cxx::_Lock_policy _Lp = __gnu_cxx::_S_atomic]’
/usr/include/c++/9/bits/shared_ptr_base.h:1344:71: required from ‘std::__shared_ptr<_Tp, _Lp>::__shared_ptr(std::_Sp_alloc_shared_tag<_Tp>, _Args&& ...) [with _Alloc = std::allocator<gtsam::DecisionTreeFactor>; _Args = {std::shared_ptr<gtsam::DiscreteFactor>}; _Tp = gtsam::DecisionTreeFactor; __gnu_cxx::_Lock_policy _Lp = __gnu_cxx::_S_atomic]’
/usr/include/c++/9/bits/shared_ptr.h:359:59: required from ‘std::shared_ptr<_Tp>::shared_ptr(std::_Sp_alloc_shared_tag<_Tp>, _Args&& ...) [with _Alloc = std::allocator<gtsam::DecisionTreeFactor>; _Args = {std::shared_ptr<gtsam::DiscreteFactor>}; _Tp = gtsam::DecisionTreeFactor]’
/usr/include/c++/9/bits/shared_ptr.h:701:14: required from ‘std::shared_ptr<_Tp> std::allocate_shared(const _Alloc&, _Args&& ...) [with _Tp = gtsam::DecisionTreeFactor; _Alloc = std::allocator<gtsam::DecisionTreeFactor>; _Args = {std::shared_ptr<gtsam::DiscreteFactor>}]’
/usr/include/c++/9/bits/shared_ptr.h:717:39: required from ‘std::shared_ptr<_Tp> std::make_shared(_Args&& ...) [with _Tp = gtsam::DecisionTreeFactor; _Args = {std::shared_ptr<gtsam::DiscreteFactor>}]’
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/build/wrap/gtsam/gtsam_wrapper.cpp:14919:86: required from here
/usr/include/c++/9/ext/new_allocator.h:146:4: error: no matching function for call to ‘gtsam::DecisionTreeFactor::DecisionTreeFactor(std::shared_ptr<gtsam::DiscreteFactor>)’
146 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/build/wrap/gtsam/gtsam_wrapper.cpp:19:
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DecisionTreeFactor.h:120:14: note: candidate: ‘gtsam::DecisionTreeFactor::DecisionTreeFactor(const gtsam::DiscreteConditional&)’
120 | explicit DecisionTreeFactor(const DiscreteConditional& c);
| ^~~~~~~~~~~~~~~~~~
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DecisionTreeFactor.h:120:60: note: no known conversion for argument 1 from ‘std::shared_ptr<gtsam::DiscreteFactor>’ to ‘const gtsam::DiscreteConditional&’
120 | explicit DecisionTreeFactor(const DiscreteConditional& c);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DecisionTreeFactor.h:116:5: note: candidate: ‘gtsam::DecisionTreeFactor::DecisionTreeFactor(const DiscreteKey&, const std::vector<double>&)’
116 | DecisionTreeFactor(const DiscreteKey& key, const std::vector<double>& row)
| ^~~~~~~~~~~~~~~~~~
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DecisionTreeFactor.h:116:5: note: candidate expects 2 arguments, 1 provided
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DecisionTreeFactor.h:112:5: note: candidate: ‘template<class SOURCE> gtsam::DecisionTreeFactor::DecisionTreeFactor(const DiscreteKey&, SOURCE)’
112 | DecisionTreeFactor(const DiscreteKey& key, SOURCE table)
| ^~~~~~~~~~~~~~~~~~
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DecisionTreeFactor.h:112:5: note: template argument deduction/substitution failed:
In file included from /usr/include/x86_64-linux-gnu/c++/9/bits/c++allocator.h:33,
from /usr/include/c++/9/bits/allocator.h:46,
from /usr/include/c++/9/string:41,
from /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/base/types.h:28,
from /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/global_includes.h:22,
from /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/base/Vector.h:29,
from /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/wrap/matlab.h:25,
from /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/build/wrap/gtsam/gtsam_wrapper.cpp:1:
/usr/include/c++/9/ext/new_allocator.h:146:4: note: candidate expects 2 arguments, 1 provided
146 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/build/wrap/gtsam/gtsam_wrapper.cpp:19:
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DecisionTreeFactor.h:108:5: note: candidate: ‘gtsam::DecisionTreeFactor::DecisionTreeFactor(const gtsam::DiscreteKeys&, const string&)’
108 | DecisionTreeFactor(const DiscreteKeys& keys, const std::string& table);
| ^~~~~~~~~~~~~~~~~~
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DecisionTreeFactor.h:108:5: note: candidate expects 2 arguments, 1 provided
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DecisionTreeFactor.h:87:5: note: candidate: ‘gtsam::DecisionTreeFactor::DecisionTreeFactor(const gtsam::DiscreteKeys&, const std::vector<double>&)’
87 | DecisionTreeFactor(const DiscreteKeys& keys,
| ^~~~~~~~~~~~~~~~~~
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DecisionTreeFactor.h:87:5: note: candidate expects 2 arguments, 1 provided
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DecisionTreeFactor.h:66:5: note: candidate: ‘gtsam::DecisionTreeFactor::DecisionTreeFactor(const gtsam::DiscreteKeys&, const ADT&)’
66 | DecisionTreeFactor(const DiscreteKeys& keys, const ADT& potentials);
| ^~~~~~~~~~~~~~~~~~
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DecisionTreeFactor.h:66:5: note: candidate expects 2 arguments, 1 provided
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DecisionTreeFactor.h:63:5: note: candidate: ‘gtsam::DecisionTreeFactor::DecisionTreeFactor()’
63 | DecisionTreeFactor();
| ^~~~~~~~~~~~~~~~~~
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DecisionTreeFactor.h:63:5: note: candidate expects 0 arguments, 1 provided
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DecisionTreeFactor.h:45:22: note: candidate: ‘gtsam::DecisionTreeFactor::DecisionTreeFactor(const gtsam::DecisionTreeFactor&)’
45 | class GTSAM_EXPORT DecisionTreeFactor : public DiscreteFactor,
| ^~~~~~~~~~~~~~~~~~
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DecisionTreeFactor.h:45:22: note: no known conversion for argument 1 from ‘std::shared_ptr<gtsam::DiscreteFactor>’ to ‘const gtsam::DecisionTreeFactor&’
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DecisionTreeFactor.h:45:22: note: candidate: ‘gtsam::DecisionTreeFactor::DecisionTreeFactor(gtsam::DecisionTreeFactor&&)’
/Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam/discrete/DecisionTreeFactor.h:45:22: note: no known conversion for argument 1 from ‘std::shared_ptr<gtsam::DiscreteFactor>’ to ‘gtsam::DecisionTreeFactor&&’
make[2]: *** [matlab/CMakeFiles/gtsam_matlab_wrapper.dir/build.make:96: matlab/CMakeFiles/gtsam_matlab_wrapper.dir/__/wrap/gtsam/gtsam_wrapper.cpp.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:34652: matlab/CMakeFiles/gtsam_matlab_wrapper.dir/all] Error 2
make: *** [Makefile:166: all] Error 2
Environment
Using a conda environment
gcc (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0
Python 3.12.4
R2024b Update 1 (24.2.0.2740171) 64-bit (glnxa64)
cmake version 3.30.5
boost_1.87.0
Adicional Information
Build results:
-- GTSAM_POSE3_EXPMAP=ON, enabling GTSAM_ROT3_EXPMAP as well
-- Found Eigen version: 3.4.0
CMake Deprecation Warning at gtsam/3rdparty/metis/CMakeLists.txt:1 (cmake_minimum_required):
Compatibility with CMake < 3.5 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
-- checking for thread-local storage - found
-- Could NOT find MKL (missing: MKL_INCLUDE_DIR MKL_LIBRARIES)
-- Building 3rdparty
-- Could NOT find GeographicLib (missing: GeographicLib_LIBRARY_DIRS GeographicLib_LIBRARIES GeographicLib_INCLUDE_DIRS)
-- Building base
-- Building basis
-- Building constrained
-- Building geometry
-- Building inference
-- Building symbolic
-- Building discrete
-- Building hybrid
-- Building linear
-- Building nonlinear
-- Building sam
-- Building sfm
-- Building slam
-- Building navigation
-- GTSAM Version: 4.3a0
-- Install prefix: /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam_install
-- Building GTSAM - as a SHARED library
-- Building base_unstable
-- Building geometry_unstable
-- Building linear_unstable
-- Building discrete_unstable
-- Building dynamics_unstable
-- Building nonlinear_unstable
-- Building slam_unstable
-- Building partition_unstable
-- GTSAM_UNSTABLE Version: 4.3a0
-- Install prefix: /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam_install
-- gtwrap Package config : /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam_install/lib/cmake/gtwrap
-- gtwrap version : 1.0
-- gtwrap CMake path : /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam_install/lib/cmake/gtwrap
-- gtwrap library path : /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam_install/lib/gtwrap
-- gtwrap binary path : /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam_install/bin/gtwrap
-- gtwrap header path : /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam_install/include/gtwrap
-- Building wrap module gtsam
CMake Warning at wrap/cmake/MatlabWrap.cmake:225 (find_package):
By not providing "FindPythonInterp.cmake" in CMAKE_MODULE_PATH this project
has asked CMake to find a package configuration file provided by
"PythonInterp", but CMake did not find one.
Could not find a package configuration file provided by "PythonInterp"
(requested version 3.12.4) with any of the following names:
PythonInterpConfig.cmake
pythoninterp-config.cmake
Add the installation prefix of "PythonInterp" to CMAKE_PREFIX_PATH or set
"PythonInterp_DIR" to a directory containing one of the above files. If
"PythonInterp" provides a separate development package or SDK, be sure it
has been installed.
Call Stack (most recent call first):
wrap/cmake/MatlabWrap.cmake:92 (wrap_library_internal)
wrap/cmake/MatlabWrap.cmake:68 (wrap_and_install_library)
matlab/CMakeLists.txt:89 (matlab_wrap)
CMake Warning at wrap/cmake/MatlabWrap.cmake:226 (find_package):
By not providing "FindPythonLibs.cmake" in CMAKE_MODULE_PATH this project
has asked CMake to find a package configuration file provided by
"PythonLibs", but CMake did not find one.
Could not find a package configuration file provided by "PythonLibs"
(requested version 3.12.4) with any of the following names:
PythonLibsConfig.cmake
pythonlibs-config.cmake
Add the installation prefix of "PythonLibs" to CMAKE_PREFIX_PATH or set
"PythonLibs_DIR" to a directory containing one of the above files. If
"PythonLibs" provides a separate development package or SDK, be sure it has
been installed.
Call Stack (most recent call first):
wrap/cmake/MatlabWrap.cmake:92 (wrap_library_internal)
wrap/cmake/MatlabWrap.cmake:68 (wrap_and_install_library)
matlab/CMakeLists.txt:89 (matlab_wrap)
-- Installing Matlab Toolbox to /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/gtsam_install/gtsam_toolbox
-- Wrote /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/build/GTSAMConfig.cmake
-- Wrote /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/build/GTSAM_UNSTABLEConfig.cmake
-- ===============================================================
-- ================ Configuration Options ======================
-- CMAKE_CXX_COMPILER_ID type : GNU
-- CMAKE_CXX_COMPILER_VERSION : 9.4.0
-- CMake version : 3.30.5
-- CMake generator : Unix Makefiles
-- CMake build tool : /usr/bin/make
-- Build flags
-- Build Tests : Enabled
-- Build examples with 'make all' : Enabled
-- Build timing scripts with 'make all' : Disabled
-- Build Docs : Enabled
-- Build shared GTSAM libraries : Enabled
-- Put build type in library name : Enabled
-- Build libgtsam_unstable : Enabled
-- Build GTSAM unstable Python : Enabled
-- Build MATLAB Toolbox for unstable : Disabled
-- Build for native architecture : Disabled
-- Build type : Release
-- C compilation flags : -O3 -DNDEBUG
-- C++ compilation flags : -O3 -DNDEBUG
-- Enable Boost serialization : ON
-- GTSAM_COMPILE_FEATURES_PUBLIC : cxx_std_17
-- GTSAM_COMPILE_OPTIONS_PUBLIC :
-- GTSAM_COMPILE_DEFINITIONS_PUBLIC :
-- GTSAM_COMPILE_OPTIONS_PUBLIC_RELEASE :
-- GTSAM_COMPILE_DEFINITIONS_PUBLIC_RELEASE :
-- Use System Eigen : OFF (Using version: 3.4.0)
-- Use System Metis : OFF
-- Using Boost version : 1.87.0
-- Use Intel TBB : Yes (Version: 2020.1)
-- Eigen will use MKL : MKL not found
-- Eigen will use MKL and OpenMP : OpenMP found but GTSAM_WITH_EIGEN_MKL is disabled
-- Default allocator : TBB
-- Cheirality exceptions enabled : YES
-- Build with ccache : No
-- Packaging flags
-- CPack Source Generator : TGZ
-- CPack Generator : TGZ
-- GTSAM flags
-- Quaternions as default Rot3 : Disabled
-- Runtime consistency checking : Disabled
-- Build with Memory Sanitizer : Disabled
-- Rot3 retract is full ExpMap : Enabled
-- Pose3 retract is full ExpMap : Enabled
-- Enable branch merging in DecisionTree : Enabled
-- Enable timing machinery : Disabled
-- Allow features deprecated in GTSAM 4.3 : Enabled
-- Metis-based Nested Dissection : Enabled
-- Use tangent-space preintegration : Enabled
-- MATLAB toolbox flags
-- Install MATLAB toolbox : Enabled
-- MATLAB root : /Data/miguelcruz/matlab
-- MEX binary : /Data/miguelcruz/matlab/bin/glnxa64/mex
-- Python toolbox flags
-- Build Python module with pybind : Disabled
-- ===============================================================
-- Configuring done (0.7s)
-- Generating done (1.5s)
-- Build files have been written to: /Data/miguelcruz/SingleImageDepthEstimation/prepareDS_registration/gtsam/gtsam/build
The text was updated successfully, but these errors were encountered:
Description
Following the github instructions I get the following error installing the matlab toolbox at the 100% mark.
Steps to reproduce
make intstall - Error:
Environment
Using a conda environment
gcc (Ubuntu 9.4.0-1ubuntu1~20.04.2) 9.4.0
Python 3.12.4
R2024b Update 1 (24.2.0.2740171) 64-bit (glnxa64)
cmake version 3.30.5
boost_1.87.0
Adicional Information
Build results:
The text was updated successfully, but these errors were encountered: