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Previously, we only reported ambiguities when they occurred. The output right now seems to always report an ambiguity even if there isn't one.
(qiime2-2019.10) 08:52:08 (dtmcdonald@here):sequence-search@master$ echo "10317.000004216" | redbiom fetch samples --output blhablah.biom --context $ctx 1 sample ambiguities observed. Writing ambiguity mappings to: blhablah.biom.ambiguities (qiime2-2019.10) 08:55:04 (dtmcdonald@here):sequence-search@master$ biom summarize-table -i blhablah.biom Num samples: 1 Num observations: 335 Total count: 11,798 Table density (fraction of non-zero values): 1.000 Counts/sample summary: Min: 11,798.000 Max: 11,798.000 Median: 11,798.000 Mean: 11,798.000 Std. dev.: 0.000 Sample Metadata Categories: None provided Observation Metadata Categories: None provided Counts/sample detail: 10317.000004216.58152: 11,798.000
The text was updated successfully, but these errors were encountered:
c18205b
BUG: fixes biocore#93
0f54e9b
Support for large numbers of features (#103)
d4af5a2
* TST: bulk get index test * Batch index requests * A little cleanup on debug items * Additional comments * sty * Update redbiom/admin.py Co-authored-by: Antonio Gonzalez <[email protected]> * BUG: fixes #108, thanks @cotillau! * VER: actually bump it, partially resolves #107, thanks @BenKaehler * tentative py3738 support * update actions * update actions * update actions * update actions * update actions * update actions * update actions * update actions * update actions * update actions * update actions * update actions * update actions * BUG: fixes #93 * BUG: fixes #92 * remove unhelpful print * Bump version * Force json (#113) * TST: sample id content type bug * MAINT: fix issue where samples with .raw as a suffix were triggering unexpected returns * Don't suffix twice * Adjsut to account for force of json * Address @antgonza's comments * use the right variable name * Verify data appear count * Verify data appear count Co-authored-by: Antonio Gonzalez <[email protected]>
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Previously, we only reported ambiguities when they occurred. The output right now seems to always report an ambiguity even if there isn't one.
The text was updated successfully, but these errors were encountered: