Unpin Altair and SciPy; update Vega* versions; support jitter plots #11
Workflow file for this run
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| # Based on | |
| # https://github.com/fedarko/pyfastg/blob/master/.github/workflows/main.yml | |
| name: Standalone CI (Python 3.6 and 3.7) | |
| on: [push, pull_request] | |
| jobs: | |
| build: | |
| # https://github.com/fedarko/wotplot/blob/main/.github/workflows/main.yml - | |
| # Pinning OS to Ubuntu 20.04, since "ubuntu-latest" (22.04, as of writing) | |
| # dropped support for Python 3.6. Ideally we'd conditionally set the OS | |
| # based on the Python version but I can't figure out how to do that :| | |
| runs-on: ubuntu-20.04 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.6", "3.7"] | |
| steps: | |
| - name: Check out code | |
| uses: actions/checkout@v4 | |
| # https://github.com/conda-incubator/setup-miniconda#example-3-other-options | |
| - name: Set up a conda environment using Python ${{ matrix.python-version }} | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: qenv | |
| python-version: ${{ matrix.python-version }} | |
| # scikit-bio 0.5.7 can't be installed into python 3.7, so we could try | |
| # scikit-bio 0.5.8, but then that requires pandas >= 1.5, and then | |
| # pandas 1.4 imposed a min python version of 3.8. We could just be like | |
| # "don't use python 3.6 or 3.7", but that's a foul thing to do due to a | |
| # single dependency having issues, so we can special-case this to still | |
| # test that python 3.6 and 3.7 work as expected. | |
| # | |
| # Pinning numpy < 1.14 per https://github.com/scikit-bio/scikit-bio/issues/1600 | |
| # NOTE: for some reason installing numpy < 1.14 through pip fails, but through | |
| # conda it succeeds. literally no idea why. not gonna question it. | |
| - name: Install Cython, NumPy, and an old version of scikit-bio | |
| run: | | |
| conda run -n qenv pip install cython | |
| conda run -n qenv conda install -y "numpy < 1.14" | |
| conda run -n qenv pip install "scikit-bio == 0.5.5" | |
| - name: Install Qurro (and its pip dependencies) | |
| run: conda run -n qenv pip install -e .[dev] | |
| - name: Set up Node.js | |
| uses: actions/setup-node@v4 | |
| - name: Install Qurro's Node.js development dependencies | |
| run: npm install -g mocha-headless-chrome [email protected] [email protected] jshint | |
| - name: Run tests | |
| run: | | |
| conda run -n qenv make pytest_standalone | |
| conda run -n qenv make jstest | |
| - name: Lint and stylecheck (not using Black to check Python code) | |
| run: conda run -n qenv make stylecheck_not_black |