bioconda · dpryan79 · Aug 18, 2019 · Dec 17, 2018 · Dec 17, 2018 · Dec 17, 2018
diff --git a/build-fail-blacklist b/build-fail-blacklist
diff --git a/recipes/bioconductor-a4/meta.yaml b/recipes/bioconductor-a4/meta.yaml
@@ -12,7 +12,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 00e7562c4412f2a31b54919b66137388
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/

diff --git a/recipes/bioconductor-a4base/meta.yaml b/recipes/bioconductor-a4base/meta.yaml
@@ -12,7 +12,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 077a2873fd1bea468bc86307a1eee4e7
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/

diff --git a/recipes/bioconductor-a4classif/meta.yaml b/recipes/bioconductor-a4classif/meta.yaml
@@ -12,7 +12,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: c194b90cc4d80c9d589d6c1269ac4da2
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/

diff --git a/recipes/bioconductor-a4core/meta.yaml b/recipes/bioconductor-a4core/meta.yaml
@@ -12,7 +12,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 0764afbd62979e811eaf99fda4807e15
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/

diff --git a/recipes/bioconductor-a4preproc/meta.yaml b/recipes/bioconductor-a4preproc/meta.yaml
@@ -12,7 +12,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: f28197ecba4a5696660442d33aa6638d
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/

diff --git a/recipes/bioconductor-a4reporting/meta.yaml b/recipes/bioconductor-a4reporting/meta.yaml
@@ -12,7 +12,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: c37278b81f6909876a48043145cbdacc
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/

diff --git a/recipes/bioconductor-abadata/meta.yaml b/recipes/bioconductor-abadata/meta.yaml
@@ -12,7 +12,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 14527790b75fc139b5bbed7981c1a1ea
 build:
-  number: 1
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/

diff --git a/recipes/bioconductor-abadata/post-link.sh b/recipes/bioconductor-abadata/post-link.sh
@@ -4,6 +4,7 @@ URLS=(
   "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/ABAData_1.14.0.tar.gz"
   "https://bioarchive.galaxyproject.org/ABAData_1.14.0.tar.gz"
   "https://depot.galaxyproject.org/software/bioconductor-abadata/bioconductor-abadata_1.14.0_src_all.tar.gz"
+  "https://depot.galaxyproject.org/software/bioconductor-abadata/bioconductor-abadata_1.14.0_src_all.tar.gz"
 )
 MD5="14527790b75fc139b5bbed7981c1a1ea"
 

diff --git a/recipes/bioconductor-abaenrichment/meta.yaml b/recipes/bioconductor-abaenrichment/meta.yaml
@@ -12,7 +12,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 1a51e6bb3d1686f966c8a12ce6e08c9f
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/

diff --git a/recipes/bioconductor-abarray/meta.yaml b/recipes/bioconductor-abarray/meta.yaml
@@ -12,7 +12,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 549b89684d9e319caac557f517acc7e3
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/

diff --git a/recipes/bioconductor-abseqr/meta.yaml b/recipes/bioconductor-abseqr/meta.yaml
@@ -12,7 +12,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: a1cf442849ec89bc9937730094727705
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/
@@ -40,7 +40,6 @@ requirements:
     - r-stringr
     - r-vegan
     - r-venndiagram
-    - pandoc >=1.19.2.1
   run:
     - 'bioconductor-biocparallel >=1.18.0,<1.19.0'
     - 'bioconductor-biocstyle >=2.12.0,<2.13.0'
@@ -61,7 +60,6 @@ requirements:
     - r-stringr
     - r-vegan
     - r-venndiagram
-    - pandoc >=1.19.2.1
 test:
   commands:
     - '$R -e "library(''{{ name }}'')"'

diff --git a/recipes/bioconductor-absseq/meta.yaml b/recipes/bioconductor-absseq/meta.yaml
@@ -12,7 +12,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 3b22e021c165c711734201fe2d8c9503
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/

diff --git a/recipes/bioconductor-acde/meta.yaml b/recipes/bioconductor-acde/meta.yaml
@@ -12,7 +12,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 5bca02d14050dab364619ac2f3fc1dd0
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/

diff --git a/recipes/bioconductor-ace/meta.yaml b/recipes/bioconductor-ace/meta.yaml
@@ -12,7 +12,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 6190b52169f64b8372c05c2c920a2e55
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/

diff --git a/recipes/bioconductor-acgh/meta.yaml b/recipes/bioconductor-acgh/meta.yaml
@@ -12,7 +12,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: be0bef86c5af1ecdb9c23f26dcea7595
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/

diff --git a/recipes/bioconductor-acme/meta.yaml b/recipes/bioconductor-acme/meta.yaml
@@ -12,7 +12,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: dda3b6d9d427487387d71d30ec8ac676
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/

diff --git a/recipes/bioconductor-adacgh2/meta.yaml b/recipes/bioconductor-adacgh2/meta.yaml
@@ -12,7 +12,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 61c8ba54a1304c9c18fc0d47b8d75dae
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/

diff --git a/recipes/bioconductor-adam/meta.yaml b/recipes/bioconductor-adam/meta.yaml
@@ -12,7 +12,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 7d35a54f2e960ec7a7ec8f6f8f9a2e54
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/

diff --git a/recipes/bioconductor-adamgui/meta.yaml b/recipes/bioconductor-adamgui/meta.yaml
@@ -12,7 +12,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 1c158e0c42e546c9f3eba19fb76a486a
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/

diff --git a/recipes/bioconductor-adaptest/meta.yaml b/recipes/bioconductor-adaptest/meta.yaml
@@ -12,7 +12,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 01ac7bda196917f184b581d772f2b112
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/

diff --git a/recipes/bioconductor-adductdata/meta.yaml b/recipes/bioconductor-adductdata/meta.yaml
@@ -12,7 +12,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: ee38a871976b2c0f4eba667771f3b3a0
 build:
-  number: 1
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/

diff --git a/recipes/bioconductor-adductdata/post-link.sh b/recipes/bioconductor-adductdata/post-link.sh
@@ -4,6 +4,7 @@ URLS=(
   "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/adductData_1.0.0.tar.gz"
   "https://bioarchive.galaxyproject.org/adductData_1.0.0.tar.gz"
   "https://depot.galaxyproject.org/software/bioconductor-adductdata/bioconductor-adductdata_1.0.0_src_all.tar.gz"
+  "https://depot.galaxyproject.org/software/bioconductor-adductdata/bioconductor-adductdata_1.0.0_src_all.tar.gz"
 )
 MD5="ee38a871976b2c0f4eba667771f3b3a0"
 

diff --git a/recipes/bioconductor-adductomicsr/meta.yaml b/recipes/bioconductor-adductomicsr/meta.yaml
@@ -12,7 +12,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: f46d8533250c8bb1e9c5c85409c1b96d
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/

diff --git a/recipes/bioconductor-adme16cod.db/meta.yaml b/recipes/bioconductor-adme16cod.db/meta.yaml
@@ -12,7 +12,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 3902516a40a503302ef732143b2394b9
 build:
-  number: 1
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/

diff --git a/recipes/bioconductor-adsplit/meta.yaml b/recipes/bioconductor-adsplit/meta.yaml
@@ -12,7 +12,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: a392edf9d83df7654bce88050c3d9a61
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/

diff --git a/recipes/bioconductor-affixcan/meta.yaml b/recipes/bioconductor-affixcan/meta.yaml
@@ -12,7 +12,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 1ecf671ff853da1943fa93927c9a84d9
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/

diff --git a/recipes/bioconductor-affxparser/meta.yaml b/recipes/bioconductor-affxparser/meta.yaml
@@ -12,7 +12,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 27535bccec824509ea79df83a641e32d
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/

diff --git a/recipes/bioconductor-affy/meta.yaml b/recipes/bioconductor-affy/meta.yaml
@@ -12,7 +12,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 0eb552db00c271587a6736744dfa0218
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/

diff --git a/recipes/bioconductor-affycomp/meta.yaml b/recipes/bioconductor-affycomp/meta.yaml
@@ -12,7 +12,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: 2e6ae6a236b15e9d2fd7f376611e4841
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/

diff --git a/recipes/bioconductor-affycompatible/meta.yaml b/recipes/bioconductor-affycompatible/meta.yaml
@@ -12,7 +12,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 997af0dcfd3582138684f9d81580588b
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/

diff --git a/recipes/bioconductor-affycompdata/meta.yaml b/recipes/bioconductor-affycompdata/meta.yaml
@@ -12,7 +12,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: a334dbc9b6dc766a2f496d967de5e918
 build:
-  number: 1
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/

diff --git a/recipes/bioconductor-affycompdata/post-link.sh b/recipes/bioconductor-affycompdata/post-link.sh
@@ -4,6 +4,7 @@ URLS=(
   "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/affycompData_1.22.0.tar.gz"
   "https://bioarchive.galaxyproject.org/affycompData_1.22.0.tar.gz"
   "https://depot.galaxyproject.org/software/bioconductor-affycompdata/bioconductor-affycompdata_1.22.0_src_all.tar.gz"
+  "https://depot.galaxyproject.org/software/bioconductor-affycompdata/bioconductor-affycompdata_1.22.0_src_all.tar.gz"
 )
 MD5="a334dbc9b6dc766a2f496d967de5e918"
 

diff --git a/recipes/bioconductor-affycontam/meta.yaml b/recipes/bioconductor-affycontam/meta.yaml
@@ -12,7 +12,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 39f0ab0f6b0ae300d20a01ff7bb67a55
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/

diff --git a/recipes/bioconductor-affycoretools/meta.yaml b/recipes/bioconductor-affycoretools/meta.yaml
@@ -12,7 +12,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: ce4c6af2de95858a0223ca0fc00c0fca
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/

diff --git a/recipes/bioconductor-affydata/meta.yaml b/recipes/bioconductor-affydata/meta.yaml
@@ -12,7 +12,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
   md5: a37af61d647439e98b7b03e7fe349ca1
 build:
-  number: 1
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/

diff --git a/recipes/bioconductor-affydata/post-link.sh b/recipes/bioconductor-affydata/post-link.sh
@@ -4,6 +4,7 @@ URLS=(
   "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/affydata_1.32.0.tar.gz"
   "https://bioarchive.galaxyproject.org/affydata_1.32.0.tar.gz"
   "https://depot.galaxyproject.org/software/bioconductor-affydata/bioconductor-affydata_1.32.0_src_all.tar.gz"
+  "https://depot.galaxyproject.org/software/bioconductor-affydata/bioconductor-affydata_1.32.0_src_all.tar.gz"
 )
 MD5="a37af61d647439e98b7b03e7fe349ca1"
 

diff --git a/recipes/bioconductor-affyexpress/meta.yaml b/recipes/bioconductor-affyexpress/meta.yaml
@@ -12,7 +12,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 428dc21416445e4ca92bbe44502f26a7
 build:
-  number: 0
+  number: 1
   rpaths:
     - lib/R/lib/
     - lib/

diff --git a/recipes/bioconductor-affyhgu133a2expr/meta.yaml b/recipes/bioconductor-affyhgu133a2expr/meta.yaml
@@ -12,7 +12,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 1eab8a17b6f940ee9d980b39ac66874b
 build:
-  number: 1
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/

diff --git a/recipes/bioconductor-affyhgu133a2expr/post-link.sh b/recipes/bioconductor-affyhgu133a2expr/post-link.sh
@@ -4,6 +4,7 @@ URLS=(
   "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/Affyhgu133A2Expr_1.20.0.tar.gz"
   "https://bioarchive.galaxyproject.org/Affyhgu133A2Expr_1.20.0.tar.gz"
   "https://depot.galaxyproject.org/software/bioconductor-affyhgu133a2expr/bioconductor-affyhgu133a2expr_1.20.0_src_all.tar.gz"
+  "https://depot.galaxyproject.org/software/bioconductor-affyhgu133a2expr/bioconductor-affyhgu133a2expr_1.20.0_src_all.tar.gz"
 )
 MD5="1eab8a17b6f940ee9d980b39ac66874b"
 

diff --git a/recipes/bioconductor-affyhgu133aexpr/meta.yaml b/recipes/bioconductor-affyhgu133aexpr/meta.yaml
@@ -12,7 +12,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: 39428013cde8719e8b487042fdea7f47
 build:
-  number: 1
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/

diff --git a/recipes/bioconductor-affyhgu133aexpr/post-link.sh b/recipes/bioconductor-affyhgu133aexpr/post-link.sh
@@ -4,6 +4,7 @@ URLS=(
   "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/Affyhgu133aExpr_1.22.0.tar.gz"
   "https://bioarchive.galaxyproject.org/Affyhgu133aExpr_1.22.0.tar.gz"
   "https://depot.galaxyproject.org/software/bioconductor-affyhgu133aexpr/bioconductor-affyhgu133aexpr_1.22.0_src_all.tar.gz"
+  "https://depot.galaxyproject.org/software/bioconductor-affyhgu133aexpr/bioconductor-affyhgu133aexpr_1.22.0_src_all.tar.gz"
 )
 MD5="39428013cde8719e8b487042fdea7f47"
 

diff --git a/recipes/bioconductor-affyhgu133plus2expr/meta.yaml b/recipes/bioconductor-affyhgu133plus2expr/meta.yaml
@@ -12,7 +12,7 @@ source:
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
   md5: f1d335aef3a0fb1371144a6f81e70fa4
 build:
-  number: 1
+  number: 2
   rpaths:
     - lib/R/lib/
     - lib/

diff --git a/recipes/bioconductor-affyhgu133plus2expr/post-link.sh b/recipes/bioconductor-affyhgu133plus2expr/post-link.sh
@@ -4,6 +4,7 @@ URLS=(
   "https://bioconductor.org/packages/3.9/data/experiment/src/contrib/Affyhgu133Plus2Expr_1.18.0.tar.gz"
   "https://bioarchive.galaxyproject.org/Affyhgu133Plus2Expr_1.18.0.tar.gz"
   "https://depot.galaxyproject.org/software/bioconductor-affyhgu133plus2expr/bioconductor-affyhgu133plus2expr_1.18.0_src_all.tar.gz"
+  "https://depot.galaxyproject.org/software/bioconductor-affyhgu133plus2expr/bioconductor-affyhgu133plus2expr_1.18.0_src_all.tar.gz"
 )
 MD5="f1d335aef3a0fb1371144a6f81e70fa4"